PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_171330_nfki.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family YABBY
Protein Properties Length: 189aa    MW: 21065.5 Da    PI: 7.8622
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_171330_nfki.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY235.31.4e-7231634170
               YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                         fs+se+vCyv+C+fCntilavsvP  s +++vtvrCGhC++llsvn+  +   ++ +++++   ++  ++++ ++++n     ++  s+s+
  Bv7_171330_nfki.t1   3 FSTSERVCYVHCTFCNTILAVSVPCCSTYNLVTVRCGHCANLLSVNIGLSPPSVPHQDNFQLVRQHYNHQDESKDSSN-----ITAGSSSS 88 
                         689**********************************************99999999986655444444444433333.....33444444 PP

               YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         ++++   ++++d++  r+pp irPPekrqrvPsayn+fikeeiqrikasnP+ishreafsaaaknWahfP+ihfgl
  Bv7_171330_nfki.t1  89 TITTVGSDQHDDHQQLRPPP-IRPPEKRQRVPSAYNKFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFGL 163
                         44444447788888888777.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-705163IPR006780YABBY protein
SuperFamilySSF470956.81E-8107156IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.1E-4111157IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDFSTSERVC YVHCTFCNTI LAVSVPCCST YNLVTVRCGH CANLLSVNIG LSPPSVPHQD  60
NFQLVRQHYN HQDESKDSSN ITAGSSSSTI TTVGSDQHDD HQQLRPPPIR PPEKRQRVPS  120
AYNKFIKEEI QRIKASNPEI SHREAFSAAA KNWAHFPHIH FGLNLDGQRQ ARLDQAVAGE  180
GANKSHGFY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685466.11e-141PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB02e-73YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0K9Q7733e-87A0A0K9Q773_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010685466.11e-141(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-73YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]