PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_171330_nfki.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

YABBY

Protein Properties

Length: 185aa MW: 20568.8 Da PI: 7.5982

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_171330_nfki.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	231.6	1.9e-71	3	159	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 fs+se+vCyv+C+fCntilavsvP s +++vtvrCGhC++llsvn+ + ++ +++++ + ++++ ++++n++ s+s+ Bv7_171330_nfki.t2 3 FSTSERVCYVHCTFCNTILAVSVPCCSTYNLVTVRCGHCANLLSVNIGLSPPSVPHQDNFQ----HYNHQDESKDSSNITA-----GSSSS 84 689*******************************************9998888888733....3333444434444333.....33333 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ ++++d++ r+pp irPPekrqrvPsayn+fikeeiqrikasnP+ishreafsaaaknWahfP+ihfgl Bv7_171330_nfki.t2 85 TITTVGSDQHDDHQQLRPPP-IRPPEKRQRVPSAYNKFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFGL 159 33333337788888888777.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-70	5	159	IPR006780	YABBY protein
SuperFamily	SSF47095	6.55E-8	103	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	107	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MDFSTSERVC YVHCTFCNTI LAVSVPCCST YNLVTVRCGH CANLLSVNIG LSPPSVPHQD 60 NFQHYNHQDE SKDSSNITAG SSSSTITTVG SDQHDDHQQL RPPPIRPPEK RQRVPSAYNK 120 FIKEEIQRIK ASNPEISHRE AFSAAAKNWA HFPHIHFGLN LDGQRQARLD QAVAGEGANK 180 SHGFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685467.1	1e-138	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	1e-72	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0K9Q8J8	1e-84	A0A0K9Q8J8_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685466.1	1e-135	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-72	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]