PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_171780_ozkh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family FAR1
Protein Properties Length: 761aa    MW: 85527.8 Da    PI: 7.034
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_171780_ozkh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.12.2e-1664137290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fY+eYAk+vGFs +  ++ + + +  +t+r+fvC keg ++++++               C+a+lk++++  +kw vtk+++eHnH+l 
  Bv7_171780_ozkh.t1  64 FYDEYAKRVGFSPKLCQTGRFRPDSAVTSRQFVCMKEGWKRKSSDI--------------CEAMLKIELK-GNKWAVTKFVKEHNHALE 137
                         9**************************************9998777..............**********.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1264137IPR004330FAR1 DNA binding domain
PROSITE profilePS5096611.399436472IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-11436470IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-8447474IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MGADNIDEED GNMRIRASTD NGDAEASEGG EVTPTDVYVV QDEVFVLEPH VGMEFESESA  60
AKTFYDEYAK RVGFSPKLCQ TGRFRPDSAV TSRQFVCMKE GWKRKSSDIC EAMLKIELKG  120
NKWAVTKFVK EHNHALESSN KVHSIRPRRH FAGTVKNVAE AYQAGVVVPS GVMYVSMDGN  180
HVSQTSVGAN HVARSMSPVE SNRQVKSSDC INYGIKSANT KRTWGKDAQN MLDYFKKMQA  240
ENPGKWHVLR EGQERLAHVC LANPSFQVEL YNCINLTETI EEFESSWASI IDKYDLRKNG  300
WLQSLYNARR QWVPVYFRDS FFAVISPNQG VECSFFDGYV NQQTTLPMFF RQYERAMEYW  360
FEKEIEADFD TISNTPVLRT PSPMEKQAAN LYTRKIFAKF QDELVETFVY TANRIDGDGA  420
TSTYRVAKFE DDHKAYTVTL NISDMRASCS CLMFEYSGIL CRHILTVFTV TNVLTLPSHY  480
ILRRWTCNAK SGGSLDEPGV NHAQESVPLR YNSLCREAIK YAEEGATASE TYAAALTGLR  540
EGGKKIANVK KNAAKFVSQM APQGSASGYD DKKTSAADTP LLWPRQDEVT RRFNLNDSAI  600
LPHPVADMNL LRMAPTSLQR DDGHADNMAV LPCLKSMTWV MENKSSAPGN RLAVINLKLQ  660
DYSKGPAIES DVKFQLSRVT LEPMLKSMAS ISEQLSAPAN RVAVINLKLQ DTETISGESE  720
VKFQVSRDTL GAMLRSMAYI REQLSAVVEP LTEQPPKKQR K
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685516.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A0K9QRR00.0A0A0K9QRR0_SPIOL; Uncharacterized protein
STRINGXP_010685516.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]