PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_171990_sxrm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 644aa    MW: 70433.6 Da    PI: 6.2113
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_171990_sxrm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.8e-07279299526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd C +aHg
  Bv7_171990_sxrm.t1 279 PCPEFRK-GSCPKGDVCEYAHG 299
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.95E-1630154IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-1730176IPR020683Ankyrin repeat-containing domain
PfamPF127962.5E-1070146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.2977178IPR020683Ankyrin repeat-containing domain
SMARTSM002488.5E-477107IPR002110Ankyrin repeat
CDDcd002041.06E-1479157No hitNo description
PROSITE profilePS5008812.369112147IPR002110Ankyrin repeat
SMARTSM002480.0026112144IPR002110Ankyrin repeat
SMARTSM003569.4E-5274300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4278301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4307337IPR000571Zinc finger, CCCH-type
SMARTSM0035652309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MCSGSKRKVV LAEEVMEGEV FKIDSVEEQQ NSSVLLELSA TNDLSSFKFA VEKEGYDVDE  60
EGLWYGRRVG SKKMGFEERT PLMVAAMFGS KDILNYILQT GRVDVNRASG SDGATALHCA  120
AAGGSLYSHE VIKLLVESSA DVNRVDANGN RPCDVVAPSF SFSSKLKRRT LDVLLNKGDQ  180
GEEGGDQIEE GQQQQQHEGL SPKSSSDGSG SERKEYPIDP SLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCPK GDVCEYAHGI  300
FECWLHPAQY RTRLCKDETS CTRRVCFFAH KQEELRPLYA STGSAVPSPR SYSQNGPSFD  360
MGSLSPLALG SPSMLMPSTS TPPMTPTGAS SPIGGASAWQ NHLNITPPPA LQLPGSRLKA  420
ALSARDMDFE AGFRRQQLLD ELAGLSLSSP SSWNGELGRL GGLSLSSPTG VQMRQNMNQQ  480
LLSSYSSGLP SSPVRGSSFG LEQSGSPVSN PRLAAFANRS QSFIDRNTVN RLSNGGGMPY  540
HSSDWGSPDG KVDWGVQGDE LNKLRKSASF AFRNNGSNSG PMRNAVNEPD VSWVHSLVKD  600
APPATSAQLG FEEQLKEQYH LNSGMDRIPP WVEQLYMDQE PMVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685536.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0K9QQB90.0A0A0K9QQB9_SPIOL; Uncharacterized protein
STRINGXP_010685536.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein