PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_172490_rjrk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 401aa    MW: 44887.3 Da    PI: 9.4069
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_172490_rjrk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.3e-06158181123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++Cp Cg++F  + +L++H+++ H
  Bv7_172490_rjrk.t1 158 FPCPCCGEVFQKQNLLEQHQSMkH 181
                         89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.93158186IPR007087Zinc finger, C2H2
PROSITE patternPS000280160181IPR007087Zinc finger, C2H2
SuperFamilySSF563992.49E-12184229No hitNo description
SuperFamilySSF563992.49E-12258400No hitNo description
Gene3DG3DSA:3.90.228.109.0E-5337400IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAKTLLSSHF NKFFFSLLLL LLHVGCFFFP SSYNNNNKNN DNNLNYHPTK KRKSSNIIHN  60
NNNLSPKKAF SSSWCFLKRV FSSSKRTKQT CPTTPPTTTT TTTTFSSPRS SQHYVIISNG  120
NDDSDLNPPP RKRRSGSRSE LECSLWENPF LPLRNDIFPC PCCGEVFQKQ NLLEQHQSMK  180
HAVSELRDGD SGKNIVWIIF NTGWTDKNNL PKIHRILKIH NSQKILSKFE DFREVVKSKA  240
ARGVSRAAVS GAVARRDERC IVDGNELLRF HCTTFLCGLG QNGNSALCNQ VYCSACGIIR  300
AGFSPKLDGI STFATSWRAH EAIPGDVEAE FAFMNVKRAM LVCRVVAGRV GCDPMVADKE  360
DSGFDSLVGR NKMGLGKVDD EELLVFNPRA VLPCFVIVYS V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685594.10.0PREDICTED: uncharacterized protein LOC104899985
TrEMBLA0A0K9RQ760.0A0A0K9RQ76_SPIOL; Uncharacterized protein
STRINGXP_010685594.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-97C2H2 family protein