PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_172670_phws.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 314aa    MW: 35227.2 Da    PI: 8.3712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_172670_phws.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81.1e-072266345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        rW++ E +++ +a + + ++   +W ++a++++ g+t  +++  + 
  Bv7_172670_phws.t1 22 RWSQAENKIFENALAVYDKDtpdRWQKVAAMLP-GKTVGDVIKQYK 66
                        9********************************.****99988775 PP
2Myb_DNA-binding48.12.6e-15134178347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Bv7_172670_phws.t1 134 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 178
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0491871IPR017884SANT domain
SMARTSM007174.5E-91971IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-112176IPR009057Homeodomain-like
CDDcd001671.10E-62268No hitNo description
PfamPF002497.3E-62266IPR001005SANT/Myb domain
PROSITE profilePS5129420.955127183IPR017930Myb domain
SuperFamilySSF466895.68E-17129182IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-18130182IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.3E-13131178IPR009057Homeodomain-like
SMARTSM007172.7E-13131181IPR001005SANT/Myb domain
CDDcd001674.33E-11134179No hitNo description
PfamPF002495.6E-13134178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEVLSSYLSS ASWLIDESRS TRWSQAENKI FENALAVYDK DTPDRWQKVA AMLPGKTVGD  60
VIKQYKELED DVCNIEAGLV PIPGYDTTSA FTLEWVNHNG YDGYRHTYSP GGKRGPPGPP  120
GARPADQERK KGVPWTEEEH KLFLMGLKKY GKGDWRNISR NFVVTRTPTQ VASHAQKYFI  180
RQLSGGKDKR RASIHDITTV NLETEALSPD NNSSSKRSNS PEQSTITVQT QQQQQQANSI  240
TMPKTHFQWD QSSNTTAIAF DTMQGNLFMA PYGVGSYGLK VQGQNIQRGD FLENYVGAQS  300
MGFQIQPTQH YPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1623881176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685614.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-135DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K9RAW40.0A0A0K9RAW4_SPIOL; Uncharacterized protein
STRINGXP_010685614.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-96Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]