PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_174070_xnfm.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 401aa MW: 43191.8 Da PI: 7.9832

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_174070_xnfm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	2e-37	92	149	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprC+st tkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r++ k+s Bv7_174070_xnfm.t1 92 PLKCPRCESTITKFCYYNNYNLSQPRHFCKSCRRYWTQGGALRNVPVGGGCRRSTKRS 149 689**************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	79	138	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	93	147	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.012	93	147	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	95	131	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MVFSSVLLYL DPPHWQQQTN HQQGVQGVGG RGNDHNNPNQ HLIPPPPLPQ PPESQVVMGG 60 GGGDGGPGAQ PIHHNLTAER ARLAKILPPV APLKCPRCES TITKFCYYNN YNLSQPRHFC 120 KSCRRYWTQG GALRNVPVGG GCRRSTKRSS SKSSSGGGGG NGNGFSSKSP PTAMVGGDRT 180 RMPLHMDLLS SSGTNPTISG IPSAGGGTGM SPFMASLQNI AQLGMGNLGL SFGGSPNTPP 240 QHHPLGRVIS GEDGNDLHHQ LDFPHQLNPN SNNQQMRYYN TFLEGFDQIP SSSVGAGLYN 300 SSFQQHHHQQ QQKIDDDHHD HDDHISSMNS QFEPVKMEVI GQEGLNISKQ FMASMTSSDN 360 NAMGNRFWDN SIGNDTNIAG SSSMWTHLSG LNNSSSTSRL L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MVFSSVLLYL DPPHWQQQTN HQQGVQGVGG RGNDHNNPNQ HLIPPPPLPQ PPESQVVMGG  60
GGGDGGPGAQ PIHHNLTAER ARLAKILPPV APLKCPRCES TITKFCYYNN YNLSQPRHFC  120
KSCRRYWTQG GALRNVPVGG GCRRSTKRSS SKSSSGGGGG NGNGFSSKSP PTAMVGGDRT  180
RMPLHMDLLS SSGTNPTISG IPSAGGGTGM SPFMASLQNI AQLGMGNLGL SFGGSPNTPP  240
QHHPLGRVIS GEDGNDLHHQ LDFPHQLNPN SNNQQMRYYN TFLEGFDQIP SSSVGAGLYN  300
SSFQQHHHQQ QQKIDDDHHD HDDHISSMNS QFEPVKMEVI GQEGLNISKQ FMASMTSSDN  360
NAMGNRFWDN SIGNDTNIAG SSSMWTHLSG LNNSSSTSRL L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	RRSTKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685787.1	0.0	PREDICTED: dof zinc finger protein DOF2.2
TrEMBL	A0A0K9QXD0	5e-90	A0A0K9QXD0_SPIOL; Uncharacterized protein
STRING	XP_010685787.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	7e-32	Dof family protein