PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_174080_ojse.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 403aa MW: 42123.3 Da PI: 8.3275

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_174080_ojse.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.6e-39	92	152	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+ lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+sss Bv7_174080_ojse.t1 92 EAPLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSS 152 6789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	75	140	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-32	94	149	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	95	149	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	97	133	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MVFSSVPLYL DPPNWQQHPN HQQVLQGSSG GGGGGNDHHH NQHLIPPPSL PQPPQSQVGM 60 GGGGGGGGPG AQPIRPNSMA ERARLAKIPP PEAPLKCPRC ESTNTKFCYF NNYSLTQPRH 120 FCKTCRRYWT RGGALRNVPV GGGCRRNKRS SSKSSSGGGG GGSSSKSSLS SPTAMVGGER 180 IPLHMDLVSS SGIGHMTSAG GGTGMSSFMA SLQNIAQLGM GNLGLSFSGG LNAPPHHPLG 240 GFSSGGVSGG GGGNEHHHQL DFPQLNTNST NQPMQFPNFL GGFEIPGSSA AAGLYNNSSF 300 QHNHHQQIDD DHDDQVDNLQ KSCSTTMNSQ FAPVKMEDNG QGLNISKQIM AAMSSSDNNN 360 ATGNQFWANT IGGNNNNNNN TAATTNMWTD LSGLNSSSTS HLL

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MVFSSVPLYL DPPNWQQHPN HQQVLQGSSG GGGGGNDHHH NQHLIPPPSL PQPPQSQVGM  60
GGGGGGGGPG AQPIRPNSMA ERARLAKIPP PEAPLKCPRC ESTNTKFCYF NNYSLTQPRH  120
FCKTCRRYWT RGGALRNVPV GGGCRRNKRS SSKSSSGGGG GGSSSKSSLS SPTAMVGGER  180
IPLHMDLVSS SGIGHMTSAG GGTGMSSFMA SLQNIAQLGM GNLGLSFSGG LNAPPHHPLG  240
GFSSGGVSGG GGGNEHHHQL DFPQLNTNST NQPMQFPNFL GGFEIPGSSA AAGLYNNSSF  300
QHNHHQQIDD DHDDQVDNLQ KSCSTTMNSQ FAPVKMEDNG QGLNISKQIM AAMSSSDNNN  360
ATGNQFWANT IGGNNNNNNN TAATTNMWTD LSGLNSSSTS HLL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685788.1	0.0	PREDICTED: dof zinc finger protein DOF2.4 isoform X1
TrEMBL	A0A0K9QXD0	1e-133	A0A0K9QXD0_SPIOL; Uncharacterized protein
STRING	XP_010685788.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	2e-37	OBF-binding protein 3