PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_174490_mcjg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 231aa    MW: 25076.1 Da    PI: 6.1654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_174490_mcjg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000724769123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ Cg+ Fs+   L  H  +H
  Bv7_174490_mcjg.t1 47 FACKTCGRKFSSFQALGGHRASH 69
                        78**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-745115No hitNo description
SMARTSM003550.264769IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-104771IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8034774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139128.6E-992117IPR007087Zinc finger, C2H2
SMARTSM003554.693115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MNNNRGGAGE IETFAMANCL MLLSSHNATM AASIGGSVGN EENGRMFACK TCGRKFSSFQ  60
ALGGHRASHK KVKSANSGEF SDEANFPAKP KVHVCSICFV EFPIGQALGG HMRRHRGMTV  120
AAVTGGSAAI SSVTTEGSIG NSDGNNDNNN GEKKRKINDD VVLEVPTAVR KSSSKRVCMD  180
VDLNLMLWRK EEKVVEEEDN NVDHEVEEGE IVEQGNDDDF LKLELRQPIR F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685828.11e-171PREDICTED: zinc finger protein ZAT12
TrEMBLA0A0K9QZC03e-69A0A0K9QZC0_SPIOL; Uncharacterized protein
STRINGXP_010685828.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.15e-27C2H2 family protein