PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_175180_gnfm.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

LBD

Protein Properties

Length: 170aa MW: 18910.5 Da PI: 5.6534

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_175180_gnfm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143	9.5e-45	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+CakdC++apyfp ++p++fa vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ Bv7_175180_gnfm.t1 7 PCASCKLLRRRCAKDCIFAPYFPPDDPQRFALVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARIRDPVYGCVGAISYLQNQVSQLQ 97 7**************************************************************************************** PP DUF260 92 aelallkee 100 +la++++e Bv7_175180_gnfm.t1 98 MQLAVAEAE 106 **99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.54	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MGTGSTPCAS CKLLRRRCAK DCIFAPYFPP DDPQRFALVH KVFGASNVSK MLQELPVHQR 60 ADAVSSLVYE ANARIRDPVY GCVGAISYLQ NQVSQLQMQL AVAEAEIMSI QMQQDPTTAL 120 LQNQIEFEDE KSLLLATSNN FSNLQHYLND FAASAGNVIQ DPLKRESLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-50	2	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-50	2	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685903.2	1e-125	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	2e-78	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0K9QTD4	1e-110	A0A0K9QTD4_SPIOL; Uncharacterized protein
STRING	XP_004296053.1	2e-90	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	8e-81	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]