PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_175670_mgyp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 267aa    MW: 28695.3 Da    PI: 8.482
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_175670_mgyp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.96.3e-42421411100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++p+++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+
  Bv7_175670_mgyp.t1  42 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPDTQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQTLQ 132
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+++++e
  Bv7_175670_mgyp.t1 133 AELNAVRAE 141
                         *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.65241142IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-4242139IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVASSYYENN HQIQVTGRRS SPHMMGLGSP SPIGNTLNTI TPCAACKLLR RRCAEECPFS  60
PYFSPHEPQK FAAVHKVFGA SNVSKLLMEV PDTQRADAAN SLVYEANVRL RDPVYGCMGA  120
ISALQQQVQT LQAELNAVRA EILKYKYREA ANTLMSATNT TQQHTHPQHH PNNNNSLVTS  180
VAAAAAVIAA SLPPQVQSPP HQSQQQPQQT TPPPPPATPP PQQPAASVVV VPSSPMGAAS  240
LYTPPLQPPD HSGNNPWLGP IKENGNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-444214911118LOB family transfactor Ramosa2.1
5ly0_B1e-444214911118LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685965.11e-151PREDICTED: LOB domain-containing protein 15
TrEMBLA0A0K9RA501e-92A0A0K9RA50_SPIOL; Uncharacterized protein
STRINGXP_010685965.11e-150(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.12e-70LOB domain-containing protein 13