PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_176050_wshp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YB
Protein Properties Length: 205aa    MW: 22791.4 Da    PI: 4.0711
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_176050_wshp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB37.84.5e-1218111693
               NF-YB   6 rflPianvsrimkkvlPa......nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                         ++lP + v r++k+ l +      +  + k+a     e +  fi ++++ a d c+  +r+ in+dd+l al ++ f ++vepl+  l+++
  Bv7_176050_wshp.t1  18 EELPKTIVRRVVKEKLSKisgdggDVTLHKEALLAFSESARIFIHYLSATAHDVCNDSNRQIINADDVLTALEEIEFSEFVEPLRGSLEEF 108
                         5677788888888777541111113345677777889999*************************************************** PP

               NF-YB  91 rel 93 
                         r+ 
  Bv7_176050_wshp.t1 109 RKK 111
                         975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-3014153IPR009072Histone-fold
PfamPF008082.4E-71989IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.56E-2120141IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAKEKSPATA TTTAMEAEEL PKTIVRRVVK EKLSKISGDG GDVTLHKEAL LAFSESARIF  60
IHYLSATAHD VCNDSNRQII NADDVLTALE EIEFSEFVEP LRGSLEEFRK KAAGKRAGTA  120
KAKEANKKRK ADEETAKGND KDEDKVDNEV NEGEDKVDDE DEDKVDNEVD EDEDKVDNEA  180
NEDEDEDEDE DEEQASEGKD DSHDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A3e-132013118123DNA polymerase epsilon subunit D
5y27_A3e-132013118123DNA polymerase epsilon subunit D
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108129RKKAAGKRAGTAKAKEANKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686000.11e-141PREDICTED: DNA polymerase epsilon subunit 3 isoform X1
TrEMBLA0A0K9R1394e-66A0A0K9R139_SPIOL; Uncharacterized protein
STRINGXP_010686000.11e-141(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.18e-38nuclear factor Y, subunit B11