PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_176220_zjwt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 366aa    MW: 42057.3 Da    PI: 6.965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_176220_zjwt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05206225120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C++C+k+F+r  n++ H+
  Bv7_176220_zjwt.t1 206 FACSICSKTFNRYNNMQMHM 225
                         78*****************9 PP
2zf-C2H212.80.00035290312123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +C+k F  k + ++H +++
  Bv7_176220_zjwt.t1 290 FMCRKCSKAFAVKGDWRTHEKNC 312
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-5197229No hitNo description
PROSITE profilePS5015710.741206233IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5206225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17206228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
SMARTSM00355140253285IPR015880Zinc finger, C2H2-like
SMARTSM0035573290310IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDLCFQAPNF IEWLKPSTPL NSPSSLSSSS SSTQQQVHSN KVTNSMMFMM KLPLFYKQHQ  60
DEEEEEEDEG ELERETTLPL LSRLIEAKTR KEEEGNHGIY KEQFDDDHDE MEKVAVALHI  120
GLPNSSSSSS SITTNNHERL SNDDDLVERK NLKLEGEKES SMIMMINDDH KEKISMNNNH  180
YSSSFNTESR FWIPTPAQIL IGPMQFACSI CSKTFNRYNN MQMHMWGHGS EYRKGPESLR  240
GTQPAAMLRL PCYCCSQGCK NNINHPRAKP LKDFRTLQTH FKRKHGIKGF MCRKCSKAFA  300
VKGDWRTHEK NCGKLWYCIC GSDFKHKRSL KDHIRSFGKG HSPYPSLEGF EDEKECITST  360
GSSEDE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686027.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-119ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0K9RYT41e-159A0A0K9RYT4_SPIOL; Uncharacterized protein
STRINGXP_010686027.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-116WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]