PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_176230_duwy.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 624aa MW: 72318.7 Da PI: 7.0729

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_176230_duwy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.3	1.9e-26	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+l+vk+++dg+w+v+++++eHnHel p Bv7_176230_duwy.t1 28 EFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASLHVKRKQDGNWYVYNFVKEHNHELLP 114 6**************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-24	28	114	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.223	384	420	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-6	390	418	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-7	395	422	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MDSNATMASS DLQPREDMEF ESHELAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASLH VKRKQDGNWY VYNFVKEHNH ELLPAQAHFF 120 RSHRDIDPLK NDVRMRRRKI LASVSKQFSA YQNVRCLDSL KRSQHGKGRS LSLDAGDAQM 180 LLDLFMHMQE EDPKFFYAIP KQLDHINIWL DDFLEMFNKC IYRSWTEEKF EKRWLKLLEK 240 FELRDDEWLR SLYENRIHWV PLFMRGVSFA GLSTRSRSEC LNSSFDTYVD SESSLTEFLE 300 QYKLLLGDRY EEEAKAEFDA WHEAPDLKSP SPFEKQMAWV YTHEIFKKFQ VEVLGAAACH 360 LKKEKEDSTG ITYTVKDFEN NQDFIVEWNE SSSEICCLCR LFEHYGYLCR HAIVVLQMSG 420 VFSIPSKYIL QRWTSAALSR HSISGKLDEV QAKVRRYNDL CRRALILAEE GSLSIESYRV 480 AVSSIRDAFQ HCNNANSCLE KDLRPNATLV YSTNYNVDET RVSHPRLCDG EPDIRLNETA 540 AAPITDVGSG GINVNIRGRA PLVRDIAVVG PEHGFTQMET SNTRPAHLHN MFPVPFHNVT 600 PSMFRGTAPA QFHHSTWQEM HLQH

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MDSNATMASS DLQPREDMEF ESHELAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASLH VKRKQDGNWY VYNFVKEHNH ELLPAQAHFF  120
RSHRDIDPLK NDVRMRRRKI LASVSKQFSA YQNVRCLDSL KRSQHGKGRS LSLDAGDAQM  180
LLDLFMHMQE EDPKFFYAIP KQLDHINIWL DDFLEMFNKC IYRSWTEEKF EKRWLKLLEK  240
FELRDDEWLR SLYENRIHWV PLFMRGVSFA GLSTRSRSEC LNSSFDTYVD SESSLTEFLE  300
QYKLLLGDRY EEEAKAEFDA WHEAPDLKSP SPFEKQMAWV YTHEIFKKFQ VEVLGAAACH  360
LKKEKEDSTG ITYTVKDFEN NQDFIVEWNE SSSEICCLCR LFEHYGYLCR HAIVVLQMSG  420
VFSIPSKYIL QRWTSAALSR HSISGKLDEV QAKVRRYNDL CRRALILAEE GSLSIESYRV  480
AVSSIRDAFQ HCNNANSCLE KDLRPNATLV YSTNYNVDET RVSHPRLCDG EPDIRLNETA  540
AAPITDVGSG GINVNIRGRA PLVRDIAVVG PEHGFTQMET SNTRPAHLHN MFPVPFHNVT  600
PSMFRGTAPA QFHHSTWQEM HLQH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	162	DSLKRS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686032.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	1e-136	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A0K9RX01	0.0	A0A0K9RX01_SPIOL; Uncharacterized protein
STRING	XP_010686028.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-138	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]