PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_176570_fgjx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 257aa    MW: 28840.4 Da    PI: 5.8526
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_176570_fgjx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-1668117255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr ++ rg+Wv+e+r+p++   + r++lg++ tae Aa+a++ a+++l+g
  Bv7_176570_fgjx.t1  68 TFRGVRERE-RGKWVCELREPKK---KSRIWLGTYPTAELAARAHDVAALALRG 117
                         58***9666.9*********854...6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-2968127IPR001471AP2/ERF domain
SMARTSM003808.7E-3068131IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-1968127IPR016177DNA-binding domain
PROSITE profilePS5103222.41868125IPR001471AP2/ERF domain
PfamPF008473.7E-1169117IPR001471AP2/ERF domain
PRINTSPR003678.8E-86980IPR001471AP2/ERF domain
CDDcd000184.18E-2969127No hitNo description
PRINTSPR003678.8E-891107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNTQISSQIL YSPLSSSGES EDTVSLDSSS TTTPAPSLNN LLSEGAAVCL PQKRKAGRKK  60
FKETRHPTFR GVRERERGKW VCELREPKKK SRIWLGTYPT AELAARAHDV AALALRGDKA  120
ALNFPNSAWL VPRAKSTSAR DIRLAAFQAT RFDLRPNCSP CEGNKNIQEN KEEIKSSTCY  180
DNDDDVKSLK KNVVDDESKV LFMDEEAIFN VHTFIDSMAA GMLLTPPSFK RGINWDEVEE  240
DNGDDDCFID LDLWRYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14661261273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686195.10.0PREDICTED: dehydration-responsive element-binding protein 1F
TrEMBLA0A0K9QEG95e-95A0A0K9QEG9_SPIOL; Uncharacterized protein
STRINGXP_010686195.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-40C-repeat/DRE binding factor 2