PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_177640_aesm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 299aa    MW: 32874.4 Da    PI: 6.3718
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_177640_aesm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16221257135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Bv7_177640_aesm.t1 221 CRHCGISEkaTPMMRRGPEGPRTLCNACGLMWANKGT 257
                         *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.51177112IPR010399Tify domain
SMARTSM009792.8E-1277112IPR010399Tify domain
PfamPF062004.6E-1381111IPR010399Tify domain
PfamPF062033.4E-16145187IPR010402CCT domain
PROSITE profilePS5101713.245145187IPR010402CCT domain
SMARTSM004014.4E-11215268IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.55215263IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12217265No hitNo description
Gene3DG3DSA:3.30.50.107.8E-15219262IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.38E-14221263No hitNo description
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
PfamPF003201.8E-14221257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDDLHGGDAQ MHMTEAEQQM HVHYMHDQNQ GMHHMSNGNG IDDEHDDGTA GAGEGIDEEL  60
HNDPGNISDN HGAMMVPSAD NNQLTLSFQG QVYVFDSVSP EKVQAVLLLL GGREVPSTVP  120
SAPLTSSHNN RGVAPTPQRF NVPQRLASLL RFREKRKERN FDKKIRYTVR KEVALRMQRN  180
KGQFTSSKPN QDESSSGATS WESNQSWGPD GPVPLQQEVC CRHCGISEKA TPMMRRGPEG  240
PRTLCNACGL MWANKGTLRD LSKSAVTGGQ NLPFPRSEEN GNFEASQLVR VAGNVSEST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696086.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G01e-123GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0J8BB740.0A0A0J8BB74_BETVU; Uncharacterized protein
STRINGXP_010696086.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-126ZIM-LIKE 2