PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_179460_yqtj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 254aa    MW: 29313.3 Da    PI: 5.7008
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_179460_yqtj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.36.9e-28331602128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         p G+rF+P d+el+ +yL +k++g+kl+  + ++ v++y+++P+ L ++++a + k wyfF++ ++++++  r+++  ++g Wk tg++++
  Bv7_179460_yqtj.t1  33 PSGYRFEPLDQELILDYLVPKLKGHKLPR-HLMHPVNLYDHDPEYLSANYEAqGPKTWYFFTSMNTSSRNRYRSSKN-ENGWWKLTGQTTT 121
                         89************************999.88**************95544426679**********9999999996.78*********** PP

                 NAM  92 vlskkgelvglkktLvf..ykgrapkgektdWvmheyrl 128
                         +++ ++e++g ++ L f  y  ++    +t+W++he+++
  Bv7_179460_yqtj.t1 122 IKNDDDEVIGSRRKLFFnfYLPKEGGDDNTRWIVHEFEV 160
                         **********9999875116667777789********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-3127187IPR003441NAC domain
PROSITE profilePS5100532.09232188IPR003441NAC domain
PfamPF023654.1E-1633159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKQPDENDAS SISSCNKPEN DTVSNSKYFK TFPSGYRFEP LDQELILDYL VPKLKGHKLP  60
RHLMHPVNLY DHDPEYLSAN YEAQGPKTWY FFTSMNTSSR NRYRSSKNEN GWWKLTGQTT  120
TIKNDDDEVI GSRRKLFFNF YLPKEGGDDN TRWIVHEFEV QGKCKLPQDQ KNQTEEKMDH  180
VLCKLFKITT RSSTKSKGQK EEKSSPEKEQ DIDLKSDCSV DLNANGNDND NDNDNVNGNE  240
EGSGKRPILP DLNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-183118716164NO APICAL MERISTEM PROTEIN
1ut4_B5e-183118716164NO APICAL MERISTEM PROTEIN
1ut7_A5e-183118716164NO APICAL MERISTEM PROTEIN
1ut7_B5e-183118716164NO APICAL MERISTEM PROTEIN
3swm_A6e-183118719167NAC domain-containing protein 19
3swm_B6e-183118719167NAC domain-containing protein 19
3swm_C6e-183118719167NAC domain-containing protein 19
3swm_D6e-183118719167NAC domain-containing protein 19
3swp_A6e-183118719167NAC domain-containing protein 19
3swp_B6e-183118719167NAC domain-containing protein 19
3swp_C6e-183118719167NAC domain-containing protein 19
3swp_D6e-183118719167NAC domain-containing protein 19
4dul_A5e-183118716164NAC domain-containing protein 19
4dul_B5e-183118716164NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696352.20.0PREDICTED: NAC domain-containing protein 35
TrEMBLA0A0J8BAM40.0A0A0J8BAM4_BETVU; Uncharacterized protein
STRINGXP_010696352.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-19NAC domain containing protein 3