PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_179540_ptjg.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C3H

Protein Properties

Length: 368aa MW: 41658.4 Da PI: 4.9859

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_179540_ptjg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	89	112	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Bv7_179540_ptjg.t1 89 KSILCEFFKA-GQCTKGFKCKFSHD 112 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.1E-5	87	113	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-6	87	112	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.394	87	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	89	113	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.4	157	194	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.235	157	195	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	8.7E-16	215	296	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MPPKQASKAD LAKKQKVVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKTD PKKDAKKKKE 60 DEKAREKELS DLFKIAVTQP KVPVGVDPKS ILCEFFKAGQ CTKGFKCKFS HDLNVQRKGE 120 KIDIYSDKRD DGTMEEWDLE TLEKAIAEKS KEYNQNKPTD IVCKHFLDAV EKKQYGWFWS 180 CPNGGKNCHY RHALPPGYVL KSQMKALLEE EADKMPIEEE IEEQRSKVKS TTPMTTELFL 240 QWKQKKTDER AANMASQSAD RAKNDRMSGR ELFMTNASLF VDDAGAWDQY EREESENNEP 300 EANEKPQEEV HGSSTHGSPD APGSSGVANG DDDDLDDIDD DLDDDELEEL EASLSRTSIQ 360 IKEPGPSA

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MPPKQASKAD LAKKQKVVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKTD PKKDAKKKKE  60
DEKAREKELS DLFKIAVTQP KVPVGVDPKS ILCEFFKAGQ CTKGFKCKFS HDLNVQRKGE  120
KIDIYSDKRD DGTMEEWDLE TLEKAIAEKS KEYNQNKPTD IVCKHFLDAV EKKQYGWFWS  180
CPNGGKNCHY RHALPPGYVL KSQMKALLEE EADKMPIEEE IEEQRSKVKS TTPMTTELFL  240
QWKQKKTDER AANMASQSAD RAKNDRMSGR ELFMTNASLF VDDAGAWDQY EREESENNEP  300
EANEKPQEEV HGSSTHGSPD APGSSGVANG DDDDLDDIDD DLDDDELEEL EASLSRTSIQ  360
IKEPGPSA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696358.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 11
Swissprot	Q0JHZ2	1e-175	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A0J8E1P0	0.0	A0A0J8E1P0_BETVU; Uncharacterized protein
STRING	XP_010696358.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-159	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]