PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_179610_tysn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family AP2
Protein Properties Length: 431aa    MW: 47779.7 Da    PI: 6.6562
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_179610_tysn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17120169155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Bv7_179610_tysn.t1 120 SQYRGVTFYRRTGRWESHIWD------NgKQVYLGGFDTAHAAARAYDRAAIKFRG 169
                         78*******************......44************************997 PP
2AP241.92.5e-13212262155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+       g    +k+++lg ++++ eAa+a+++a+++ +g
  Bv7_179610_tysn.t1 212 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLYDSEIEAARAYDKAALQCNG 262
                         89********.7******...5...334336**********99**********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-10120169IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16120179IPR016177DNA-binding domain
CDDcd000186.22E-12121179No hitNo description
PROSITE profilePS5103218.281121177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17121177IPR001471AP2/ERF domain
SMARTSM003802.4E-32121183IPR001471AP2/ERF domain
PfamPF008472.3E-9212262IPR001471AP2/ERF domain
CDDcd000181.70E-24212272No hitNo description
SuperFamilySSF541711.63E-16212272IPR016177DNA-binding domain
PROSITE profilePS5103215.172213270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15213270IPR001471AP2/ERF domain
SMARTSM003801.1E-28213276IPR001471AP2/ERF domain
PRINTSPR003675.2E-6214225IPR001471AP2/ERF domain
PRINTSPR003675.2E-6252272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLDLNLNAFS PDSTSENLLP ETSFTSNNSS SLDIDNNADS LSSNSTTPYN FDILNNGASI  60
THDHHHPIIN RGEASSWAGL VTKDFFPGPA QPIRIDCGPV MIGQAQKMKK SRRGPRSRSS  120
QYRGVTFYRR TGRWESHIWD NGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFDVSD  180
YEDDLKQMNN LSKEEFVHLL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QLLGKKYIYL  240
GLYDSEIEAA RAYDKAALQC NGKEAVTNFD PSIYGDDMIS ETHDEGCQYS LDLNLGIGNP  300
SFADSQQTPH NPGSYSFLHD QDNRLTNIRP KDQNCIQAAT VPPPHLAHAL PSEHHSSWGS  360
ANPIFFPVYQ ERAIEKTSET DPWSNWAWQI QFQGGHGSAM PVPVFSTAAS SGFPSITTAS  420
SAAVGRTHFS N
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696369.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ84TB51e-101AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0J8B7060.0A0A0J8B706_BETVU; Uncharacterized protein
STRINGXP_010696369.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-88related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]