PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_180000_eoqx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CO-like
Protein Properties Length: 388aa    MW: 43887.6 Da    PI: 5.8669
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_180000_eoqx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.6e-072365238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        ++r C+ ++e  + l+C  ++  lC +C  e H+       Ht
  Bv7_180000_eoqx.t1 23 QKRLCDFCNESIALLYCSADSAKLCLSCDREVHSTnqlftkHT 65
                        7899******99*********************6677777777 PP
2CCT61.23.5e-21339381143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         R+ a++RYkeK++tR+FeK+irYesRK  A++R R+KGrF+k 
  Bv7_180000_eoqx.t1 339 RDSAISRYKEKKRTRRFEKHIRYESRKLQADNRRRIKGRFAKV 381
                         899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-122269IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5232269IPR000315B-box-type zinc finger
PfamPF006432.1E-52366IPR000315B-box-type zinc finger
CDDcd000213.19E-62569No hitNo description
PROSITE profilePS501199.15865112IPR000315B-box-type zinc finger
CDDcd000210.0063269112No hitNo description
SMARTSM003360.9570112IPR000315B-box-type zinc finger
PROSITE profilePS5101714.793339381IPR010402CCT domain
PfamPF062032.5E-15339381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MPELSRTNCH SNPQNNQHNI TTQKRLCDFC NESIALLYCS ADSAKLCLSC DREVHSTNQL  60
FTKHTRFQLC DVCHASSALI LCVTEHSVLC HNCDYEVHSL PRNSDNHDRR PLEGFTGCPS  120
VSEISATLGL EDIDAKCTIV DDDQSENNKS FCGGLFSGLD QENDEFTDLF WDAPTMVSLD  180
ELIVSTDKQH NFQAMVVPPL PKDRNLSCGQ HKHEMFHQLL ELAKSEPGIE QDAKPQARHH  240
IVGDVDEKDS TLQLNDEEHP TFQVNEASPY IWCNDTGEDG NEVFLSIEDS VLNSAGTHSG  300
MCSSAHLTTD GWNSQYPVRN ESLGLPPNVS TREINSADRD SAISRYKEKK RTRRFEKHIR  360
YESRKLQADN RRRIKGRFAK VDNHKKKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370386RRRIKGRFAKVDNHKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696415.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X1
TrEMBLA0A0J8BAJ10.0A0A0J8BAJ1_BETVU; Uncharacterized protein
STRINGXP_010696415.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-82B-box type zinc finger protein with CCT domain