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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Bv8_181760_mqsr.t1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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| Family | bHLH | ||||||||
| Protein Properties | Length: 254aa MW: 28294.3 Da PI: 7.7275 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 40.7 | 4.3e-13 | 60 | 108 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r+h e+ErrRR+riN +++Lr+ lP + ++ K++Ka+ L +++ Ik L
Bv8_181760_mqsr.t1 60 RSHCEAERRRRERINGHLANLRTFLPCS---DKVKMDKATLLAEVISQIKVL 108
58*************************9...9**************999976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.83E-13 | 49 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 14.589 | 57 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.3E-12 | 60 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 8.1E-11 | 60 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.0E-10 | 63 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:3.30.70.260 | 5.0E-5 | 151 | 221 | No hit | No description |
| CDD | cd04873 | 1.32E-8 | 151 | 220 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 254 aa Download sequence Send to blast |
MDSSFQVQND QAFPAFGSYM PNNMQSYWES PETNMGELLK TPASSRKKDT SKTKNSAALR 60 SHCEAERRRR ERINGHLANL RTFLPCSDKV KMDKATLLAE VISQIKVLKK QAIEATKDLL 120 VPTDANEVTV EPYDDGGGDD IADSLYAFRA SICCEYKPEL ITDIRQAISD LKLTITKAEI 180 STLEGRVKNL LIVTGCKEDI GHGKSEKFAK SIQDALCSVL QKMSVVEEYL PTTMLSNKRR 240 KISCFEPSTS SPSL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 65 | 70 | ERRRRE |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010686302.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
| Refseq | XP_010686303.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
| Refseq | XP_010686305.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
| Refseq | XP_010686306.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
| Refseq | XP_019106643.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
| TrEMBL | A0A0K9QVB0 | 1e-72 | A0A0K9QVB0_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010686302.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G56770.1 | 6e-33 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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