PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_182210_zdgz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 258aa    MW: 29589.1 Da    PI: 5.1173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_182210_zdgz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.4e-19114165256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrd ++   + +r++lg+f tae+Aa a+++a+++++g+
  Bv8_182210_zdgz.t1 114 HYRGVRRRP-WGKYAAEIRDSTK---KgARVWLGTFNTAEDAALAYDKAALRIRGA 165
                         7********.**********433...34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-32113172IPR001471AP2/ERF domain
PROSITE profilePS5103223.565114172IPR001471AP2/ERF domain
CDDcd000182.89E-30114173No hitNo description
SMARTSM003808.7E-37114178IPR001471AP2/ERF domain
PfamPF008472.6E-13114164IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-23114174IPR016177DNA-binding domain
PRINTSPR003678.8E-11115126IPR001471AP2/ERF domain
PRINTSPR003678.8E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTIKKEEQNH QPPEAILENI WANYVGESTS ENFQDWTEIP CLEEKEVTPY ALQRLPSLGR  60
WMSMGAETWE QLLNGNVIPS TSTNPREEGN ISERGRYDSS ESMGKSNRIV PVRHYRGVRR  120
RPWGKYAAEI RDSTKKGARV WLGTFNTAED AALAYDKAAL RIRGAKACLN FPIEVLNKAI  180
GRQYEPLEEK NGCNPWKRKA RSDWDLQSNY YCNNLMMEQP SLKRSRDNME NSLNAQDDVL  240
ELEDLGSDIL ENLLSLTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-29113175163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686478.10.0PREDICTED: ethylene-responsive transcription factor 1B
TrEMBLA0A0K9R6461e-101A0A0K9R646_SPIOL; Uncharacterized protein
STRINGXP_010686478.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-24ERF family protein