PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_182240_kmxf.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WOX
Protein Properties Length: 473aa    MW: 51401.4 Da    PI: 7.5806
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_182240_kmxf.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1762122257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Bv8_182240_kmxf.t2  62 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 122
                         89*****************99*************************************995 PP
2Wus_type_Homeobox112.52.2e-3661124265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++kq
  Bv8_182240_kmxf.t2  61 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 124
                         689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-743121IPR009057Homeodomain-like
PROSITE profilePS5007110.49558123IPR001356Homeobox domain
SuperFamilySSF466892.01E-1258128IPR009057Homeodomain-like
SMARTSM003893.0E-960127IPR001356Homeobox domain
CDDcd000869.69E-961124No hitNo description
PfamPF000462.6E-1562122IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNNQ QWSQHHDTNH HQSSLLSNSC ARSSSTNSPF SSGCEERSPE  60
PKPRWNPKPE QIRILEAIFN SGMVNPPRDE IRRIRAQLQE YGQVGDANVF YWFQNRKSRS  120
KHKQRTLQAK ITATAATTTN HHSPPPPMPA SSSSSSSDKA SPRKVPPCRS GGGSSYGSIS  180
SNTSSSNNNN NSNNNNNNNV VVDQFGNSPT SVNQCNSYFQ QLVTPLHHHT TTTSTTTHEF  240
VPQDQPLYFP LHQQSSGVNM VGNFSQGLCF GTSSHHDDDH HNQLINTNSA TIHVSPDSDQ  300
AAGGFSSLLL GDMFGGGGGS HDHSKVEKFK IQQEMSFLVS NPQNTMTSSS TIVPTPTTSA  360
IPSNFGQMLG VGGSGGLAAK STVFINGMAF EIPVGPFNVK EEFGEYAVLI NSSSGQPVLT  420
NEWGVTLHPL QHGASYYLVG SVAASPLLDK LDTASDLLAP GYPYHQWNTM NWT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686367.10.0PREDICTED: WUSCHEL-related homeobox 9 isoform X1
TrEMBLA0A0K9R8K30.0A0A0K9R8K3_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010686367.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.16e-56homeobox-3