PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_182470_rroc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 425aa    MW: 48121.4 Da    PI: 5.3186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_182470_rroc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05166189123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C+ Cg+ ++++ +Lk+H +  H
  Bv8_182470_rroc.t1 166 YVCTVCGRKCRTNIELKKHFKQlH 189
                         9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10109.4E-585166IPR029060PIN domain-like
PROSITE profilePS5015711.053166194IPR007087Zinc finger, C2H2
SMARTSM003550.0061166189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168189IPR007087Zinc finger, C2H2
CDDcd061672.51E-10195320No hitNo description
Gene3DG3DSA:3.40.50.10109.4E-5251305IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MIFSLQIPPS TYHPPPPPPP PPSSSSSSSS TLFLSLPSLT KPPKKTSLSF PTKPIILSPP  60
IQCHSPHINM DIDMIQTKEG IFTPKQTKVV VLWDLDNKPP RGPPYDAALS LKSLAARFGD  120
VVEISAYANR HAFSHLPTRV LEERRERKRL DVLERKGILT CSPDAYVCTV CGRKCRTNIE  180
LKKHFKQLHE RERQKKLSRM KQLKGKKRQR FKERYLDKNV KFEEAARNLI MPKVGYGLAK  240
ELRRAGVYVK TVEDKPQAAD WAVKRQMMHS MSRGVDWLLL VSDDSDFREM LGKAREANLG  300
TVVVGDRNGA LGAKADMWVS WIGVENGEVG EKDLVPKRKK VEDWGECGDD DEGLFSMSEF  360
DEGVEGDETE LDHIVDEVVR PNGKSNAGSG RFSIFSEGEE DEEWMDDDDY EEDDDDDFDS  420
EDELD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686395.10.0PREDICTED: glutamic acid-rich protein
TrEMBLA0A0K9RK000.0A0A0K9RK00_SPIOL; Uncharacterized protein
STRINGXP_010686395.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-120C2H2-like zinc finger protein