PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_182680_iuha.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 165aa    MW: 18052.5 Da    PI: 10.5
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_182680_iuha.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-201362255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g
  Bv8_182680_iuha.t1 13 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRG 62
                        7********.**********883....5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-271269No hitNo description
SMARTSM003801.5E-361376IPR001471AP2/ERF domain
PfamPF008473.0E-131362IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-221371IPR016177DNA-binding domain
PROSITE profilePS5103222.6691370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-311371IPR001471AP2/ERF domain
PRINTSPR003674.7E-111425IPR001471AP2/ERF domain
PRINTSPR003674.7E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MASASTSTPR EAHYRGVRKR PWGRYAAEIR DPWKKTRVWL GTFDTPEEAA LAYDGAARSL  60
RGIKAKTNFP LLSPPPPPPP PPPPPPQPLI SSSSLSLDLN LRPTSALTGP HHQTRFVEYL  120
RSSSSTTVVR GTDVVEGLGL GLGVRTERGL KVDLNEPPPL WQMSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-221371564ATERF1
3gcc_A3e-221371564ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686418.11e-114PREDICTED: ethylene-responsive transcription factor 12
TrEMBLA0A068TU637e-46A0A068TU63_COFCA; Uncharacterized protein
STRINGXP_010686418.11e-114(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-39ERF domain protein 12