PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_182840_npyy.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 388aa MW: 42790.7 Da PI: 8.986

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_182840_npyy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.9e-39	62	121	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprCdstntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Bv8_182840_npyy.t1 62 QEVLRCPRCDSTNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 121 67899****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-33	63	119	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-29	63	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.497	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MASVASITGT VVGDTTSTRV MDHKVAAIAQ DHQQHQQQQQ QHQQHQQQLQ QHQQQQQKAG 60 NQEVLRCPRC DSTNTKFCYY NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRV 120 KRSSNNSSNS SNNSNIEVSI SSASSGGGGG GGLNSLSSGG QIHDLISSSS NHVNHHQNHP 180 LFYGLPTNHS ANSDINYPFS RYDLQNPHQI NGLGLGFSSG LVQNMDNMNI HHNHPQNTKQ 240 IFQDLISSSA NNPMLSNYTN TTTTTTTTSP TISSLLASSI HQMKGANNNF QTLLPSYEDD 300 LHMKGNGQNG MFRKEVKMEF EGQNRSFTTN HHHWNNNNPS NQNHQIMDQN IMSSSSDPSI 360 LWGTSGPNLG AWLDPSNNNL GSSVPSLI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MASVASITGT VVGDTTSTRV MDHKVAAIAQ DHQQHQQQQQ QHQQHQQQLQ QHQQQQQKAG  60
NQEVLRCPRC DSTNTKFCYY NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRV  120
KRSSNNSSNS SNNSNIEVSI SSASSGGGGG GGLNSLSSGG QIHDLISSSS NHVNHHQNHP  180
LFYGLPTNHS ANSDINYPFS RYDLQNPHQI NGLGLGFSSG LVQNMDNMNI HHNHPQNTKQ  240
IFQDLISSSA NNPMLSNYTN TTTTTTTTSP TISSLLASSI HQMKGANNNF QTLLPSYEDD  300
LHMKGNGQNG MFRKEVKMEF EGQNRSFTTN HHHWNNNNPS NQNHQIMDQN IMSSSSDPSI  360
LWGTSGPNLG AWLDPSNNNL GSSVPSLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686431.1	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A0K9RKK6	1e-107	A0A0K9RKK6_SPIOL; Uncharacterized protein
STRING	XP_010686431.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	9e-35	Dof family protein