PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_182870_ueus.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 326aa MW: 34636.4 Da PI: 8.1452

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_182870_ueus.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.4	1.3e-37	57	112	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++cprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+k+ Bv8_182870_ueus.t1 57 QPCPRCNSKNTKFCYYNNYSLSQPRFFCKGCRRYWTQGGTLRNVPVGGGCRKSKRP 112 68***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-21	49	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-32	57	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.845	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDHQFIVVGQ NGQHQQPENN QQNRRGAGDA PGAGGGDGGD GGDGGGGGQN NSSLPPQPCP 60 RCNSKNTKFC YYNNYSLSQP RFFCKGCRRY WTQGGTLRNV PVGGGCRKSK RPKLSGSSSG 120 SASSSMALPP PIGQRNLNPA QQHQHQNQHQ HQHQLPVISS AAATTAAVAV VGNNNTNNNN 180 NNMFFGRGNS AGYFMSSLAA MQQGVNVSQP LTFGPNLGLL HGFSLPSFQT QQNNQQDQLF 240 QNMYSIRDIA GSSSSSAGDW NLGVQPSALP PPLPSLSETN NSNGDDNINT NNNTNNNNSS 300 NSNSNTNNDQ INQWADFMGN TGLDDP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686435.1	0.0	PREDICTED: dof zinc finger protein PBF
TrEMBL	A0A2P5X787	6e-40	A0A2P5X787_GOSBA; Uncharacterized protein
STRING	XP_010686435.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	3e-27	Dof family protein