PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_184020_pfso.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 341aa    MW: 38461.1 Da    PI: 8.6032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_184020_pfso.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33e-53151421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+v+yLk+k+++++l++ ++i+evd+yk++Pw+Lp+k+  +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Bv8_184020_pfso.t1  15 LPPGFRFHPTDEELIVHYLKRKASSSPLPV-SIIAEVDLYKFDPWELPSKAIFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 104
                         79****************************.89***************7777799************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++ ++++vg+kk Lvfy g+ p+g ktdW+mheyr+
  Bv8_184020_pfso.t1 105 ILTSnGNQKVGVKKALVFYGGKPPRGIKTDWIMHEYRI 142
                         *99867788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-647178IPR003441NAC domain
PROSITE profilePS5100561.76315178IPR003441NAC domain
PfamPF023651.1E-2716142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MESTDSSSTQ PYPQLPPGFR FHPTDEELIV HYLKRKASSS PLPVSIIAEV DLYKFDPWEL  60
PSKAIFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG NQKVGVKKAL  120
VFYGGKPPRG IKTDWIMHEY RIIDANSTSK LPHPLVDHPS KKASLRLDDW VLCRIYKKNN  180
TQRTMDHERD DLIEEMIKHQ KLMRTICPKN TTSMMDHNNN DQNLFDLSQL GTSTSRHDLY  240
DMQGNDHKRE LPVSLYWDDQ MGSIGSSSGR RFHHPQSDQT TGSTGTDGNS SSFVSMLSQL  300
PQGINNTTTV PFSMGSPLLV GNIGDGVLRP PFQLSGGTWN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-741518015170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686575.10.0PREDICTED: NAC transcription factor 25
SwissprotQ8GY421e-106NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0K9QEW30.0A0A0K9QEW3_SPIOL; Uncharacterized protein
STRINGXP_010686575.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-104NAC domain containing protein 25