PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_184250_skrq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family G2-like
Protein Properties Length: 299aa    MW: 32915 Da    PI: 5.675
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_184250_skrq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1084.9e-341872155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Bv8_184250_skrq.t1 18 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6881575IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-321673IPR009057Homeodomain-like
SuperFamilySSF466896.45E-181672IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251873IPR006447Myb domain, plants
PfamPF002491.2E-92071IPR001005SANT/Myb domain
PfamPF143791.5E-23104150IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDPVSGNSLS NSPSLSSKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI  60
YHVKSHLQKY RLAKYLPDSS AEGKKADKKE SADLLYGLES SSGMQITEAL KLQMEVQKRL  120
HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGTLAEVPG SGDFGSGQLM PDKHLCSDST  180
KSDPATPVPT SESPLGKNSK DCAVAKSLSL DESFSSQQEP LTPDSTCLDA TTCENLNEAR  240
LVKKACLTND ESFSNQEIFF TEQILESGMT PSLQQSHPVY AGELFDPSAL SLGKEYRSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-241875259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106686.10.0PREDICTED: myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-120PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0K9R9S31e-145A0A0K9R9S3_SPIOL; Uncharacterized protein
STRINGXP_010686602.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-105G2-like family protein