PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_185950_rpwf.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

G2-like

Protein Properties

Length: 258aa MW: 29063.7 Da PI: 10.4948

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_185950_rpwf.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.4	2.1e-30	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LH +F++av++LGG+++AtPk il++m+v+g+t++hvkSHLQ+YR+ Bv8_185950_rpwf.t1 32 KPRLRWTEDLHYCFLRAVARLGGEDRATPKMILHVMGVDGITVSHVKSHLQMYRS 86 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.1	29	89	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-29	29	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.81E-16	30	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-25	32	86	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-7	34	85	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MERRNFLRNV VGVHDNLNPN VLGVRPYVRS KKPRLRWTED LHYCFLRAVA RLGGEDRATP 60 KMILHVMGVD GITVSHVKSH LQMYRSVRQD LLIQDALDAA KKSGNDMQLI SKLPELLNHS 120 SRAVTRRQTR LQRIKGVLIK NALDKHFPND VLMPQLPPLP PLTLPKRVAR KNSQQQAKMN 180 DQAYMMFSDL VKNSISTATQ VNAAKGKEKI IYCDDPSTST KDLLSNFKSA ASDSSLELNI 240 CRCSVIPTNE DLSLALSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010686814.1	1e-145	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-29	G2-like family protein