PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_189700_tntc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 351aa    MW: 38834.7 Da    PI: 4.3176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_189700_tntc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-102773171055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Bv8_189700_tntc.t1 277 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 317
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14269331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12272326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.38E-12276321No hitNo description
PfamPF000104.4E-8277317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MESGATMEGG EWSTFNGVSV NEEADFMAQL FPNCSFDNEL ESSSLALSSS CYSGMTGGDS  60
GVFFSNADIN SNLYCLSQGS SNYSGNSASV AYPYDESYCL SDAQQYLAAN SCSFPVDLLP  120
SVAKNFVQRF PGNAMERNDN LDLEMSCGAS FDDRPDFSNE HLQLKREDEM SEMEPATEDR  180
SSNDLLESGR KRSRNSEKGK RNIRTKKNQK NVSDDEDNVL EHTRQNMSSS SEEECNGSQE  240
LSGVASSNLS SKDTPIMNGK TRASRGAATD PQSLYARKRR ERINERLKIL QNLVPNGTKV  300
DISTMLEEAV QYVKFLQLQI KLLSSDDLWM YAPLAYNGMD IGLDSKIEAL L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687357.10.0PREDICTED: transcription factor bHLH84
TrEMBLA0A0K9RMZ11e-144A0A0K9RMZ1_SPIOL; Uncharacterized protein
STRINGXP_010687357.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.19e-62bHLH family protein