PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_190180_ktgn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 191aa    MW: 21874.5 Da    PI: 4.6279
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_190180_ktgn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.64.3e-3561261128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF P+deelvv++L++k    +++  +vi+++d+y ++Pw+L+ k+ +e +++y++s++         +nr+t+sgyWka g d++
  Bv8_190180_ktgn.t1   6 LPPGFRFCPSDEELVVHFLRRKDGLLPFHP-DVIPDLDVYPYNPWELEGKAFSEGNKCYYYSRKI--------QNRVTESGYWKAMGMDEP 87 
                         79*************************999.99**************9777778899****9975........58**************** PP

                 NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+  +++ vg+kk  vf+ g+ p g  t+W+mheyrl
  Bv8_190180_ktgn.t1  88 IMSSssSKKIVGMKKYYVFHIGEPPAGAWTSWIMHEYRL 126
                         ***9767778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-454158IPR003441NAC domain
PROSITE profilePS5100541.9766158IPR003441NAC domain
PfamPF023655.8E-217126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAGDNLPPGF RFCPSDEELV VHFLRRKDGL LPFHPDVIPD LDVYPYNPWE LEGKAFSEGN  60
KCYYYSRKIQ NRVTESGYWK AMGMDEPIMS SSSSKKIVGM KKYYVFHIGE PPAGAWTSWI  120
MHEYRLPDSL GSTSKSTSRK RGQPKDYNKC VICKVYEQSN DDDDGDNDTE LSCLDEVFLS  180
MDDLDEISLP N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-31516019170NAC domain-containing protein 19
3swm_B1e-31516019170NAC domain-containing protein 19
3swm_C1e-31516019170NAC domain-containing protein 19
3swm_D1e-31516019170NAC domain-containing protein 19
3swp_A1e-31516019170NAC domain-containing protein 19
3swp_B1e-31516019170NAC domain-containing protein 19
3swp_C1e-31516019170NAC domain-containing protein 19
3swp_D1e-31516019170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687465.11e-141PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK66e-72NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1B2RWF31e-102A0A1B2RWF3_9CARY; NAC transcription factor 42
STRINGXP_010687465.11e-141(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-72xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]