PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_190480_ddzp.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C3H

Protein Properties

Length: 273aa MW: 30001.4 Da PI: 8.345

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_190480_ddzp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.9	6.8e-13	119	145	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yktelC+ + tGtC+yG +C+FaHg+ Bv8_190480_ddzp.t1 119 YKTELCMSWEDTGTCRYGYKCQFAHGQ 145 9************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.87E-10	117	150	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.8E-17	117	150	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.037	118	146	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-8	118	145	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.8E-10	119	145	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MKGYYSSSAS SSIGSPNLNF RNDCVSPINS PNESILMRYL RSGSPSDHDY SPSRNTSRSV 60 VSRSSISSRS PLSGLENLEE DVLVMDGILV DSNKISKSAG KFRSPVNSDS SPNSGVNLYK 120 TELCMSWEDT GTCRYGYKCQ FAHGQEEMRP LQNRFRTDYV VQFMDPYYSP LSSPFSSSSK 180 KISPETTAPA PTKEARKSKS KKASLTQPND TRSVTPNLTS TDWSPMDDGI VVELPSSTGK 240 APSRQAVDEH IHSVICGPSQ KKRLPVFVDI CPE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010687506.1	0.0	PREDICTED: mRNA decay activator protein ZFP36
Refseq	XP_010687507.1	0.0	PREDICTED: mRNA decay activator protein ZFP36
TrEMBL	A0A0J8BQ95	0.0	A0A0J8BQ95_BETVU; Uncharacterized protein
STRING	XP_010687506.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	7e-10	C3H family protein