PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_190680_oogs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 225aa    MW: 25407.7 Da    PI: 4.4163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_190680_oogs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-171867255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Bv8_190680_oogs.t1 18 KYTGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAAQYCLRG 67
                        89****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.09E-271877No hitNo description
SMARTSM003801.6E-281881IPR001471AP2/ERF domain
PROSITE profilePS5103221.2981875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-281876IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-201876IPR016177DNA-binding domain
PfamPF008471.1E-101867IPR001471AP2/ERF domain
PRINTSPR003671.8E-81930IPR001471AP2/ERF domain
PRINTSPR003671.8E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVKKSPEYQD NKGESSIKYT GVRKRKWGKW VSEIRLPNSR ERIWLGSYDS PEKAARAFDA  60
AQYCLRGKSA NFNFPDNPPD IAGGRSMTPA EIQAAAARFA NLSSNDVVDD HRMIIDESSE  120
HRTVEETLCY SPSLSDATTV QMDSFEMGGV ENSFHEQLSL STALGSGNYV SDFGYYCTGF  180
DDFTAADFYT TTQQQQQQQP DNFNHGCMDD TYDASLYQDS YLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-151375972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687541.11e-171PREDICTED: ethylene-responsive transcription factor ERF017
TrEMBLA0A0K9QIZ01e-106A0A0K9QIZ0_SPIOL; Uncharacterized protein
STRINGXP_010687541.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-55ERF family protein