PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_190700_iajz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 227aa    MW: 25996.4 Da    PI: 4.4536
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_190700_iajz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-171867255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr +k +g+Wv+e+r p++   r r++lg+++++e+Aa+a +aa  +l+g
  Bv8_190700_iajz.t1 18 KYTGVRKRK-WGKWVSEVRLPNS---RERIWLGSYDSPEKAARAFDAAQYCLRG 67
                        89****999.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-191876IPR016177DNA-binding domain
CDDcd000183.27E-261877No hitNo description
Gene3DG3DSA:3.30.730.101.2E-271876IPR001471AP2/ERF domain
PfamPF008471.4E-101867IPR001471AP2/ERF domain
SMARTSM003806.4E-271881IPR001471AP2/ERF domain
PROSITE profilePS5103221.141875IPR001471AP2/ERF domain
PRINTSPR003671.8E-81930IPR001471AP2/ERF domain
PRINTSPR003671.8E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVKKSPEYQE TKHESSIKYT GVRKRKWGKW VSEVRLPNSR ERIWLGSYDS PEKAARAFDA  60
AQYCLRGKSA NFNFPDNPPN IPGRLSMTPA EIQAAASKFA NLSFSDVRND HWMVTEVLED  120
HHQQESLSYS SSSISDETTV QDFQVVNSFQ VVEGEVETSF HEQLSLCTAL GSGNYVSDFG  180
YYCTEFDDFT AADFYTTTQH QLDNFSYGCE DDTYDASLYQ DSYLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1518751472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687542.11e-172PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ9S7L52e-47ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A0K9QIZ02e-96A0A0K9QIZ0_SPIOL; Uncharacterized protein
STRINGXP_010687542.11e-171(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]