PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_191760_rhxh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family AP2
Protein Properties Length: 343aa    MW: 39213.4 Da    PI: 7.1084
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_191760_rhxh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.4e-1550110156
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkklege 56 
                         s+y+GV++++++gr++A+++d  s+ +   k+ k+++lg ++ +  Aa+a++ a++k++ge
  Bv8_191760_rhxh.t1  50 SKYRGVTRHRWTGRYEAHLWDkDSWiDTqkKKgKQVYLGAYDDEATAARAYDLAALKYWGE 110
                         89*******************888895566446**********99*************997 PP
2AP249.79e-16152203155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++++grW+A+I  +     +k+ +lg+f t eeAa a++ a+ +++g
  Bv8_191760_rhxh.t1 152 SKYRGVARHHYNGRWEARIGRVLG---NKYLYLGTFATQEEAASAYDIAAIQYRG 203
                         89****************988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-1650119IPR016177DNA-binding domain
PfamPF008471.1E-1150110IPR001471AP2/ERF domain
CDDcd000184.88E-1950116No hitNo description
SMARTSM003801.2E-2351123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1551118IPR001471AP2/ERF domain
PROSITE profilePS5103219.26951117IPR001471AP2/ERF domain
PRINTSPR003673.6E-65263IPR001471AP2/ERF domain
CDDcd000182.65E-24152213No hitNo description
SuperFamilySSF541712.62E-17152213IPR016177DNA-binding domain
PfamPF008472.8E-10152203IPR001471AP2/ERF domain
SMARTSM003805.0E-26153217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-18153212IPR001471AP2/ERF domain
PROSITE profilePS5103218.176153211IPR001471AP2/ERF domain
PRINTSPR003673.6E-6193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAKAPIKRKQ KCSSDDHNTK TTNNHVKIAT TKVKRARKCS PRKSPFQRSS KYRGVTRHRW  60
TGRYEAHLWD KDSWIDTQKK KGKQVYLGAY DDEATAARAY DLAALKYWGE NTILNFSLST  120
YEDDMKEMDG LSREEYLGSL RRKSNGFSRG LSKYRGVARH HYNGRWEARI GRVLGNKYLY  180
LGTFATQEEA ASAYDIAAIQ YRGLNAVTNF DLSHYLKPNN SSDNQPSPKD THVEPNKSVD  240
SSVSTSSSNQ SFLGHTFEQT YDQVQVDDAI SIDEIMGGQP PLLSFDEFDL LEYNMSDDNL  300
YMHMEGQCSS TNDIRNHEKD FFSDLNSILC DFDVMEAEQI GTM
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687653.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotQ94AN47e-91AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0K9QHQ51e-172A0A0K9QHQ5_SPIOL; Uncharacterized protein
STRINGXP_010687653.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-97AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]