PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_194200_tpei.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

YABBY

Protein Properties

Length: 204aa MW: 23157.1 Da PI: 7.9727

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_194200_tpei.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220.8	3.9e-68	8	177	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelk.veeenlksnvekeesa 92 + sseq+Cy+ CnfCn +lavsvP + +f +vtvrCGhCt+l sv++a a + a++ + +++ + ++ + + + e +++ ++++++ Bv8_194200_tpei.t1 8 AVPSSEQLCYIPCNFCNIVLAVSVPCNNMFDIVTVRCGHCTNLWSVDMAAAFRSFASSWQHHQQQNFHQGPNCGnTGEYKIDNLGSSSKCN 98 5689******************************************9988776665543444444433343303344555555555555 PP YABBY 93 stsvss.eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 t++++ +++s ++++++ ++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Bv8_194200_tpei.t1 99 YTNKATtMRISPPMNNNTSEERIINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 177 444443033455566666666679***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.9E-70	11	177	IPR006780	YABBY protein
SuperFamily	SSF47095	5.89E-8	120	170	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	125	171	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MTSCVDQAVP SSEQLCYIPC NFCNIVLAVS VPCNNMFDIV TVRCGHCTNL WSVDMAAAFR 60 SFASSWQHHQ QQNFHQGPNC GNTGEYKIDN LGSSSKCNYT NKATTMRISP PMNNNTSEER 120 IINRPPEKRQ RVPSAYNQFI KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE 180 TNNQAKLDED SQKHLMPRTA LLNN

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010687959.1	1e-154	PREDICTED: axial regulator YABBY 5 isoform X1
Swissprot	Q8GW46	5e-78	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0K9QZA0	1e-120	A0A0K9QZA0_SPIOL; Uncharacterized protein
STRING	XP_010687959.1	1e-153	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-80	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]