PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_194850_rqtm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 515aa    MW: 58800.1 Da    PI: 6.2493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_194850_rqtm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-0689110325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                         t++C ++++ G+C+ Gd+C+F H
  Bv8_194850_rqtm.t1  89 TVPCYYYYQ-GFCSKGDQCPFRH 110
                         99*******.***********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.488635IPR000571Zinc finger, CCCH-type
SMARTSM003560.07734IPR000571Zinc finger, CCCH-type
PfamPF156632.8E-11762No hitNo description
PROSITE profilePS5010310.5683763IPR000571Zinc finger, CCCH-type
SMARTSM003560.43962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.93986113IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-486112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-687111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-489111IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-489110IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MEEELIKRNT DCVYFLASPF TCKKGVECEY RHSDMARLNP RDCWYWLSGN CLNPTCAFRH  60
PPLEIHNEGS TEAAPDLLNQ SSMPATKTTV PCYYYYQGFC SKGDQCPFRH EPANAFGWKS  120
KMANAVADAP VASFDCKASG RADVAPVAAD KDSILSEIAM TGNRLQVEQK QQAQQSATEF  180
IPEPNTSEPT YIQQCEETAA VKTMFLPAEG SIKSERDLSF DSGQNSEELI GGNMVQDELW  240
ESSPGFDVLV DGQTEDMAYD DDPDCLHALD GDDGDCERLF IPHGVARQTH YDERGFFDNG  300
LYEPSDFVEE NLRNDLREYS SRHTRDRKAR RLVAHTRNSF SVESPVGACY DVDLRDYLRK  360
RRMDDDYMDT RDLRHNILTH VGEGRQERLQ RHASLRRLPG RIASKVERYG ARLPRRRDYV  420
VDAEQRGRPR NSQHDGYRQY NGMQSRQFMT ERRSTSKRER SAQESKFHRP KSRAGIKEDR  480
TIGHFNKNGS VDFEGPKPLS EILKDKKKTS SSADS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688036.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
TrEMBLA0A0K9R2290.0A0A0K9R229_SPIOL; Uncharacterized protein
STRINGXP_010688036.10.0(Beta vulgaris)