PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_196840_quuj.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 396aa MW: 43801.2 Da PI: 6.9399

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_196840_quuj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00053	275	313	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Bv8_196840_quuj.t1 275 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 313 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.566	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-10	273	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.26E-6	273	317	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-7	277	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MNRGHHVLQN SPVQQMMVAG NPSWWPNINN LMRPPIISSS HHHQQPLLSS PSSSSTTNFL 60 APPPNNNNND INNNVYQAHY NMNNMPTQAS SSSWLDDHHA NQHHQEQHQQ VLPESWSQLL 120 LGGVFLGDEA KKMETNWEEQ VVLQQQQHHP HLIDVKQESS VNSYTNNVYS TTTTQDQEFH 180 LAAAAATTNN WSHHHPHQLN IPVSSPQSCV TSYSSSNNLL DFSSSISSEN LHSRQPPPPP 240 PDRSSECNST NTGGAAKKAK VQASSTQSST TFKVRKEKLG DRITALHQLV SPFGKTDTAS 300 VLLEAIGYIR FLQSQIEALS LPYLNTGTGN KRQPHTILND NCLKRKGGPD DQDSYDQEPK 360 DLRSRGLCLV PVSCTLHVGS DNGADYWAPA LGGGFR

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MNRGHHVLQN SPVQQMMVAG NPSWWPNINN LMRPPIISSS HHHQQPLLSS PSSSSTTNFL  60
APPPNNNNND INNNVYQAHY NMNNMPTQAS SSSWLDDHHA NQHHQEQHQQ VLPESWSQLL  120
LGGVFLGDEA KKMETNWEEQ VVLQQQQHHP HLIDVKQESS VNSYTNNVYS TTTTQDQEFH  180
LAAAAATTNN WSHHHPHQLN IPVSSPQSCV TSYSSSNNLL DFSSSISSEN LHSRQPPPPP  240
PDRSSECNST NTGGAAKKAK VQASSTQSST TFKVRKEKLG DRITALHQLV SPFGKTDTAS  300
VLLEAIGYIR FLQSQIEALS LPYLNTGTGN KRQPHTILND NCLKRKGGPD DQDSYDQEPK  360
DLRSRGLCLV PVSCTLHVGS DNGADYWAPA LGGGFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688253.1	0.0	PREDICTED: transcription factor bHLH68
TrEMBL	A0A0K9RPU8	1e-141	A0A0K9RPU8_SPIOL; Uncharacterized protein
STRING	XP_010688253.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-61	bHLH family protein