PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_197850_tdfd.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 533aa MW: 60133.1 Da PI: 7.0199

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_197850_tdfd.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.3	4.3e-34	52	208	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpk.............kvkaeekewyfFskrdkkyat 70 lp+G++F+Ptd+el+ e+L++kvegk+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+t Bv8_197850_tdfd.t2 52 LPAGVKFDPTDQELI-EHLEAKVEGKSFKSHPlidefipTIEGEdGICYTHPEKLPGedgicythpeklpGVTRDGLSRHFFHRPSKAYTT 141 799**********.99*****5543344454443554435888888888733677666665444444455688******** PP NAM 71 gkrknratk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 g+rk+r+++ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Bv8_197850_tdfd.t2 142 GTRKRRKIQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 208 **73334555544778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-35	47	227	IPR003441	NAC domain
PROSITE profile	PS51005	31.281	52	227	IPR003441	NAC domain
Pfam	PF02365	4.5E-16	53	208	IPR003441	NAC domain
Gene3D	G3DSA:1.20.1000.10	2.8E-5	335	386	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MNITNKAHQI NTISSASDLI DAKLEEHQLC GSKHCPGCGH KLEGSKPDWV GLPAGVKFDP 60 TDQELIEHLE AKVEGKSFKS HPLIDEFIPT IEGEDGICYT HPEKLPGEDG ICYTHPEKLP 120 GVTRDGLSRH FFHRPSKAYT TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC 180 KKILVLYTNF GKNRKPEKTN WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWTTNER 240 SATTGDGSEP SGRKESGSGS GSTSSSKEVI THHNRDDHMS ISAGVVGGAL SSYNTALDLQ 300 HLRATTEHFS FVPFSRKTFD EAGIGDASTV RETASISAAC DDHEQQQQQQ QQQHQQHQQQ 360 QQQHQQQHHQ QHQHQHHQHH HHLLHHPHAM NAPQDHQHHT HQAISTTAAF HMSRPSHPIS 420 QIISPSPLHH ASIILDDDSF QHVSRIMFQN ESFQHQQQQH QEQQQQQTQQ QQHHKLGGRS 480 AAGLEEIIMG CTSSASPSAG GIKEESSMTN PSEAEWLKYS TFWHDPDHSD HHG

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MNITNKAHQI NTISSASDLI DAKLEEHQLC GSKHCPGCGH KLEGSKPDWV GLPAGVKFDP  60
TDQELIEHLE AKVEGKSFKS HPLIDEFIPT IEGEDGICYT HPEKLPGEDG ICYTHPEKLP  120
GVTRDGLSRH FFHRPSKAYT TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC  180
KKILVLYTNF GKNRKPEKTN WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWTTNER  240
SATTGDGSEP SGRKESGSGS GSTSSSKEVI THHNRDDHMS ISAGVVGGAL SSYNTALDLQ  300
HLRATTEHFS FVPFSRKTFD EAGIGDASTV RETASISAAC DDHEQQQQQQ QQQHQQHQQQ  360
QQQHQQQHHQ QHQHQHHQHH HHLLHHPHAM NAPQDHQHHT HQAISTTAAF HMSRPSHPIS  420
QIISPSPLHH ASIILDDDSF QHVSRIMFQN ESFQHQQQQH QEQQQQQTQQ QQHHKLGGRS  480
AAGLEEIIMG CTSSASPSAG GIKEESSMTN PSEAEWLKYS TFWHDPDHSD HHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688374.1	0.0	PREDICTED: NAC domain-containing protein 35 isoform X1
Refseq	XP_010688375.1	0.0	PREDICTED: NAC domain-containing protein 35 isoform X2
Refseq	XP_019107023.1	0.0	PREDICTED: NAC domain-containing protein 35 isoform X1
Refseq	XP_019107024.1	0.0	PREDICTED: NAC domain-containing protein 35 isoform X1
Swissprot	Q9M0F8	1e-175	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0K9Q905	0.0	A0A0K9Q905_SPIOL; Uncharacterized protein
STRING	XP_010688374.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-138	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]