PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv8_197970_cpyp.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C3H

Protein Properties

Length: 377aa MW: 41225.7 Da PI: 7.0489

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_197970_cpyp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	143	163	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd+C FaHg Bv8_197970_cpyp.t1 143 ACSEFRK-GGCKKGDSCEFAHG 163 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.2E-5	138	164	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.69	138	165	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	143	165	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	143	163	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	24	173	196	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.465	173	197	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MMIGENHRHH QIHVPPWQES VNPSIQFSTS STSSSMLSSS SSNTTVNNNN NHLPNSPTYY 60 DAVLASLRRY LIHDSGEKES STNSGELLDF HVEDYDDDFF MYDFKVRKCT RARAHDWTEC 120 PFAHPGEKAK RRDPHKYDYS GTACSEFRKG GCKKGDSCEF AHGVFECWLH PARFRTQACK 180 DGPGCKRRVC FFAHSPDQLR NGPGVGSPRG SGQTGHYLSG TEDGSAVAVG VAGISAMSSP 240 TSANTVGELV ASLRNLQLNK VKSMPTAGSG SWGHVGGGSP VFGSPRGVVG TTAMSRAGFF 300 SLPTTPTRPR VGYWDSKEFI DEEEEPMMER VESGRELRAR MFEKLSKENP LDGSGSPLSI 360 STRGPGPDFG WVSDLIE

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MMIGENHRHH QIHVPPWQES VNPSIQFSTS STSSSMLSSS SSNTTVNNNN NHLPNSPTYY  60
DAVLASLRRY LIHDSGEKES STNSGELLDF HVEDYDDDFF MYDFKVRKCT RARAHDWTEC  120
PFAHPGEKAK RRDPHKYDYS GTACSEFRKG GCKKGDSCEF AHGVFECWLH PARFRTQACK  180
DGPGCKRRVC FFAHSPDQLR NGPGVGSPRG SGQTGHYLSG TEDGSAVAVG VAGISAMSSP  240
TSANTVGELV ASLRNLQLNK VKSMPTAGSG SWGHVGGGSP VFGSPRGVVG TTAMSRAGFF  300
SLPTTPTRPR VGYWDSKEFI DEEEEPMMER VESGRELRAR MFEKLSKENP LDGSGSPLSI  360
STRGPGPDFG WVSDLIE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688398.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 20
Swissprot	O82199	9e-96	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A0K9RHJ2	1e-173	A0A0K9RHJ2_SPIOL; Uncharacterized protein
STRING	XP_010688398.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	7e-77	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]