PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_198510_ekky.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family AP2
Protein Properties Length: 307aa    MW: 34115.6 Da    PI: 5.8216
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_198510_ekky.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.6e-1586135355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Bv8_198510_ekky.t1  86 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 135
                         9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.85149IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-91450IPR016177DNA-binding domain
SMARTSM003809.6E-51455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-91549IPR001471AP2/ERF domain
CDDcd000181.39E-111751No hitNo description
SuperFamilySSF541713.79E-1884145IPR016177DNA-binding domain
CDDcd000183.23E-2684145No hitNo description
PROSITE profilePS5103219.20385143IPR001471AP2/ERF domain
SMARTSM003803.7E-3385149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1885143IPR001471AP2/ERF domain
PfamPF008476.3E-1086135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MIADMGEHVS SFLPTTVYLG GYDKEEKAAR AYDLAALKYW GPTTTTNFSI SDYEKELEEM  60
QNMSRQEFVA SLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE  120
EAAEAYDIAA IKFRGLNAVT NFDISRYDVK SIISSNLPVG GMSNKSKSIS DHEEIKTIEH  180
IKPELPLIVS PHQSSTTMNH DFMGIPIKSD SSSQNYNWPA LEPGNNNEAL GYASFGYVQQ  240
QPYSNSNGNN DTSEGYNGYE VSGDNENNSN DRGVTVSNSW IVTPNLHSLQ SPKQNVTVLQ  300
TPIFGIE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688479.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ38e-99AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0K9QZV91e-117A0A0K9QZV9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688479.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-96AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]