PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_198690_ehns.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 137aa    MW: 15277.1 Da    PI: 9.1401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_198690_ehns.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145274123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C++ F ++  L  H++ H
  Bv8_198690_ehns.t1 52 FSCTYCKRKFYSSQALGGHQNAH 74
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-64979No hitNo description
Gene3DG3DSA:3.30.160.603.9E-45292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0325279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDFDLKISPT TSSTNISQVI NLNLDLDLDL VLDRSSSTTS TPSGHASEAR VFSCTYCKRK  60
FYSSQALGGH QNAHKLERTL AKKSKELNSV VTNKPHNLGT PQHVHPQKQF SDHMGSYGRR  120
DINYGSTKED LDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021755393.15e-43zinc finger protein 2-like
SwissprotQ392617e-21ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A068U3252e-30A0A068U325_COFCA; Uncharacterized protein
STRINGXP_009798282.14e-27(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-23zinc finger protein 2