PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_198850_yjyh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CO-like
Protein Properties Length: 378aa    MW: 41553 Da    PI: 6.4124
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_198850_yjyh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.6e-062959434
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                        r C+ ++   + l+C+ +  +lC  C +++H
  Bv8_198850_yjyh.t1 29 RSCDSCHAAAALLYCKADAAFLCGPCDTKIH 59
                        68******99********************9 PP
2zf-B_box27.75.7e-0970115342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 
                          ++C+ +e+ ++   C+ +   lC +C + +H +       H++vp+
  Bv8_198850_yjyh.t1  70 VWVCEVCEQAPAVVTCKADAAALCSSCDQDIH-SvnplasrHERVPI 115
                         689*****************************.55899999999987 PP
3CCT69.86.8e-24313356144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k++
  Bv8_198850_yjyh.t1 313 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRVKGRFAKRT 356
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0032662IPR000315B-box-type zinc finger
CDDcd000212.35E-82972No hitNo description
PfamPF006431.5E-52969IPR000315B-box-type zinc finger
PROSITE profilePS501199.4993172IPR000315B-box-type zinc finger
SMARTSM003361.7E-1468115IPR000315B-box-type zinc finger
PROSITE profilePS5011910.87968115IPR000315B-box-type zinc finger
PfamPF006432.6E-769115IPR000315B-box-type zinc finger
CDDcd000215.76E-1071115No hitNo description
PfamPF062031.1E-17313355IPR010402CCT domain
PROSITE profilePS5101716.857313355IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVAATDDSNS NSNNMRGLLS GWGLSLTGRS CDSCHAAAAL LYCKADAAFL CGPCDTKIHL  60
PTSYPRHERV WVCEVCEQAP AVVTCKADAA ALCSSCDQDI HSVNPLASRH ERVPIIPFLD  120
TTTAPSSAAS AFLVPDHLPA SIEDADAWLI PNPSTTLLYN DSDFLNFGYG FESPTQFQQQ  180
DVKPIVHQQN GAYAFTDSVV PTQTQTQTQS PSQSQSQGNN FNNVTTSLFE NCFNIDFTQP  240
NKLNNTNNKN KNNHLFSSSF NYSANAHQSV SSSDIGVVPD GNTNSMSSEV SYTFVRSMSN  300
DVGSSIGAPV MDREARVLRY REKRKNRRFE KTIRYASRKA YAETRPRVKG RFAKRTDTKE  360
TSEIDFTLDD GYGVVPAF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688513.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A0K9QX531e-163A0A0K9QX53_SPIOL; Uncharacterized protein
STRINGXP_010688513.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.12e-69CONSTANS-like 5