PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_199060_znkf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 518aa    MW: 57858.4 Da    PI: 4.5272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_199060_znkf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.72.7e-54111372128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrFhPtdeel+ +yLk+k++++kl+l ++i+evd+yk+eP++Lp  + +k+++++w+fFs+rd+ky++g+r+nrat++gyWkatgkd+
  Bv8_199060_znkf.t1  11 PPGFRFHPTDEELILYYLKRKISHRKLKL-DIIAEVDVYKCEPEELPglSVLKNGDRQWFFFSPRDRKYPNGSRANRATRQGYWKATGKDR 100
                         8****************************.99***************6448888999********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ + ++++vg+kktLvfy+grap+g++tdWvmhey l
  Bv8_199060_znkf.t1 101 TIAC-NSRNVGIKKTLVFYRGRAPTGQRTDWVMHEYIL 137
                         ****.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-617160IPR003441NAC domain
PROSITE profilePS5100556.07410160IPR003441NAC domain
PfamPF023655.4E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAANLADDVW PPGFRFHPTD EELILYYLKR KISHRKLKLD IIAEVDVYKC EPEELPGLSV  60
LKNGDRQWFF FSPRDRKYPN GSRANRATRQ GYWKATGKDR TIACNSRNVG IKKTLVFYRG  120
RAPTGQRTDW VMHEYILEED ELKRCQNVHD YYVIYKVFKK SGPGPKNGEQ YGAPFREEDW  180
AEDDCPKSTS SCDQLNTAQQ VGNDSPTDSC TYAEVDRAVN NICELLDCVP DEPRPLPVNI  240
DDFEQALSQF LGEEDNQSTV TNPSYEEANN TLVLDDDFIE MDDLFGPEPV QGLSTVLPQP  300
TGGVIPEDSQ LRIEDGLSEF DLYYDADAIL RDLAPNDQTV PPAEFHRSQE NYYFNQVEGL  360
SFSGDELWTY DSTVCNFNST DNKGSMPLPS TGVIYGGMSA AISTDLNQSQ EAEKSQPWSS  420
TIWSFVESIP AAPASAAESA LLNKAFHRMS SFGRVRINSK NTISAAALSA NKSSSAGVGG  480
RMKGYFIFSF LAALFAVVCV FIGSNASVFG KLHCRMNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-481116618171NO APICAL MERISTEM PROTEIN
1ut4_B1e-481116618171NO APICAL MERISTEM PROTEIN
1ut7_A1e-481116618171NO APICAL MERISTEM PROTEIN
1ut7_B1e-481116618171NO APICAL MERISTEM PROTEIN
3swm_A1e-481116621174NAC domain-containing protein 19
3swm_B1e-481116621174NAC domain-containing protein 19
3swm_C1e-481116621174NAC domain-containing protein 19
3swm_D1e-481116621174NAC domain-containing protein 19
3swp_A1e-481116621174NAC domain-containing protein 19
3swp_B1e-481116621174NAC domain-containing protein 19
3swp_C1e-481116621174NAC domain-containing protein 19
3swp_D1e-481116621174NAC domain-containing protein 19
4dul_A1e-481116618171NAC domain-containing protein 19
4dul_B1e-481116618171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696509.10.0PREDICTED: NAC domain-containing protein 17
TrEMBLA0A0M4N0240.0A0A0M4N024_9CARY; NAC transcription factor
STRINGXP_010696509.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-104NAC domain containing protein 17