PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_199110_cuct.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 534aa    MW: 60327.5 Da    PI: 8.7746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_199110_cuct.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13352396554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + Er+RR++iN++f+ Lr+llP+      +K +Ka++L+ + eY++sL
  Bv8_199110_cuct.t1 352 HMISERKRREKINESFQALRSLLPQG-----TKKDKASVLRTTKEYLSSL 396
                         8899********************97.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.25E-13347401No hitNo description
PROSITE profilePS5088815.98347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16348414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14350414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11352396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-15353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDSVFQLSNG DRVSCLLNLM HSFSASYICL WTYSQHLNCL YCEEGHFQEE ASSSSSSGVT  60
ISRGLFNEYK QSVYTIGNDL VPGFAFKNKN PYLELQELDL HRLASIELQR QFYLEAKIKI  120
AVFLGCERGE IELGMSNIPQ NLKLKMQSLF QMTDIPISKD QHNKPSSSSS QSMDSPEYLP  180
YLYNYPISSN FHLQQQQFLK ESPSNIIDQQ VTSNMQSIIP FTTMTTTAAT TATTTATIIG  240
VSNHLHHHPL LQNIPFPTPE STDAALTKAY LAILSSPSLS SRGGEQGCFP DSHKVRQRAS  300
AFKSYHHSSL RQCSNQNLRR QTLMKRAIAF YRGLNLSRMQ EPGRPTSTQL HHMISERKRR  360
EKINESFQAL RSLLPQGTKK DKASVLRTTK EYLSSLKAQL SELSKRSQLL EAQLLKKRTS  420
EATITTQLDV ATNRNLAVNV TPVSESTSGE RMVDLQVILR RETSVPDLVI RVLEFLKQVK  480
EASIVSMEAQ THQETAGVHI HTNFVAFRLR IEGTEWDESN FTEALRRLLA DLAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360ERKRRE
2356361RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102724.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A0K9QD401e-172A0A0K9QD40_SPIOL; Uncharacterized protein
STRINGXP_010696570.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-57bHLH family protein