PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_199150_dpsq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 976aa    MW: 105248 Da    PI: 9.206
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_199150_dpsq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.6e-07547567526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          Cr++++ G C+ G++CkF+H+
  Bv8_199150_dpsq.t1 547 DCRHYLK-GRCQEGENCKFSHD 567
                         7******.*************7 PP
2zf-CCCH21.63.7e-07601621525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ + + G+C++Gd+C F+H
  Bv8_199150_dpsq.t1 601 PCNSYVAAGFCSRGDSCLFSH 621
                         7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0041541568IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408542569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6546567IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-5547567IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4548567IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028571597IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.352571595IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53596624IPR000571Zinc finger, CCCH-type
SMARTSM003560.1598623IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-5600622IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MESSSKNLFK ELFGPPPPRR PIPSKTLSTV VKIFSIFSDQ NPFSQHSSYT KQSDDSCNDV  60
VTPRGEKEAS NELVGSATVE AQKLSRGGKE ISNELVGSAT VEAQILPVHD KTNNDEIDGD  120
LSKEISFSGS KLIIDELGRT NTENKAMDRF PSDEEGANDA MGEFGRVHEE LSGIERILMD  180
ESDDFDVLQL PDKDSNFDFL NGFSSILDTD VCVTNFITNE SKGSGKMTVD GDMKEDRTGE  240
KKRKDVEVNK LSSGGDEAKS DNHLSLVFSD TNFITHESKG SGKMTVNGDM KADRTVTPDC  300
QNQYVRKKRK LCEKTSPQDL SDSGGLTFSA LKSGYEEGAV SNSIRKESKS VNATKGVTEK  360
TKDTSAKDVN SGLGKLSFID SGTSSSTKLR GPDPVVRGKM VKQNVNGNTG KVSAMKVGTN  420
RPKGRERFQY SREELLKLWK ITSAPEDILE TVREINVELQ HGKIQNSAAG KISCGSNEGK  480
LVAVTKDKMA KDKDSSILKD KKRGSSSETK KEKKKRQKRK KRAEMNKKLG VKRLKLKPLV  540
KPKVISDCRH YLKGRCQEGE NCKFSHDVIP LTKSKPCCHF ARQACMKGDD CPYDHQLSSY  600
PCNSYVAAGF CSRGDSCLFS HKIPSGTAAD VSKCEPTLEQ HKSDSKQQCN ANASLPSEIA  660
ALKSLKEDLT KQTNQQAKAP KGLSFLSSGK SSLKDAGKHE EAYLSQKSGG AAGTSSQPNI  720
ATRTAVNLVK TLMDTPASDT SQGLEFPSSD SNSVGSLENK KQANLSVHGD HSSFHSFGKT  780
LLQESAKYEK VGLSNRAGVA GGGGSDGGGK QLNKEMSSRV TDCEKRQSHP APMSCKQSVP  840
SSGGPLYDNY GGESQATLPT NGHSDTQIKE KETANGSDNA VQQKLWGSPT SIGQFSTKVG  900
MKNTSSTSQR ALLSTLAFAA KYESGIKMTS AATFKEVAKN GGSSSSGHKQ NEPSKASAIL  960
DFLYSGGNKE KKGGGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1500521KKRGSSSETKKEKKKRQKRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696520.10.0PREDICTED: uncharacterized protein LOC104909038 isoform X3
TrEMBLA0A0K9REP90.0A0A0K9REP9_SPIOL; Uncharacterized protein
STRINGXP_010696517.10.0(Beta vulgaris)