PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_199150_dpsq.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 1006aa    MW: 108531 Da    PI: 9.1985
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_199150_dpsq.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.9e-07577597526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          Cr++++ G C+ G++CkF+H+
  Bv8_199150_dpsq.t2 577 DCRHYLK-GRCQEGENCKFSHD 597
                         7******.*************7 PP
2zf-CCCH21.63.8e-07631651525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ + + G+C++Gd+C F+H
  Bv8_199150_dpsq.t2 631 PCNSYVAAGFCSRGDSCLFSH 651
                         7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0041571598IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408572599IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6576597IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-5577597IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4578597IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028601627IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.352601625IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53626654IPR000571Zinc finger, CCCH-type
SMARTSM003560.1628653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5630652IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1006 aa     Download sequence    Send to blast
MESSSKNLFK ELFGPPPPRR PIPSKTLSTV VKIFSIFSDQ NPFSQHSSYT KQSDDSCNDV  60
VTPRGEKEAS NELVGSATVE AQKLSRGGKE ISNELVGSAT VEAQILPVHD KTNNDEIDGD  120
LSKEISFSGS KLIIDELGRT NTENKAMDRF PSDEEGANDA MGEFGRVHEE LSGIERILMD  180
ESDDFDVLQL PDKDSNFDFL NGFSSILDTD VCVTNFITNE SKGSGKMTVD GDMKEDRTGE  240
KKRKDVEVNK LSSGGDEAKS DNHLSLVFSD TNFITHESKG SGKMTVNGDM KADRTGEKKR  300
KDVEVNKLFS GGDEAKSDNH LSVLTVTPDC QNQYVRKKRK LCEKTSPQDL SDSGGLTFSA  360
LKSGYEEGAV SNSIRKESKS VNATKGVTEK TKDTSAKDVN SGLGKLSFID SGTSSSTKLR  420
GPDPVVRGKM VKQNVNGNTG KVSAMKVGTN RPKGRERFQY SREELLKLWK ITSAPEDILE  480
TVREINVELQ HGKIQNSAAG KISCGSNEGK LVAVTKDKMA KDKDSSILKD KKRGSSSETK  540
KEKKKRQKRK KRAEMNKKLG VKRLKLKPLV KPKVISDCRH YLKGRCQEGE NCKFSHDVIP  600
LTKSKPCCHF ARQACMKGDD CPYDHQLSSY PCNSYVAAGF CSRGDSCLFS HKIPSGTAAD  660
VSKCEPTLEQ HKSDSKQQCN ANASLPSEIA ALKSLKEDLT KQTNQQAKAP KGLSFLSSGK  720
SSLKDAGKHE EAYLSQKSGG AAGTSSQPNI ATRTAVNLVK TLMDTPASDT SQGLEFPSSD  780
SNSVGSLENK KQANLSVHGD HSSFHSFGKT LLQESAKYEK VGLSNRAGVA GGGGSDGGGK  840
QLNKEMSSRV TDCEKRQSHP APMSCKQSVP SSGGPLYDNY GGESQATLPT NGHSDTQIKE  900
KETANGSDNA VQQKLWGSPT SIGQFSTKVG MKNTSSTSQR ALLSTLAFAA KYESGIKMTS  960
AATFKEVAKN GGSSSSGHKQ NEPSKASAIL DFLYSGGNKE KKGGGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1530551KKRGSSSETKKEKKKRQKRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696517.10.0PREDICTED: uncharacterized protein LOC104909038 isoform X1
TrEMBLA0A0K9REP90.0A0A0K9REP9_SPIOL; Uncharacterized protein
STRINGXP_010696517.10.0(Beta vulgaris)