PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_199150_dpsq.t3
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 1048aa    MW: 113736 Da    PI: 9.403
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_199150_dpsq.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.3e-07619639526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          Cr++++ G C+ G++CkF+H+
  Bv8_199150_dpsq.t3 619 DCRHYLK-GRCQEGENCKFSHD 639
                         7******.*************7 PP
2zf-CCCH21.54e-07673693525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ + + G+C++Gd+C F+H
  Bv8_199150_dpsq.t3 673 PCNSYVAAGFCSRGDSCLFSH 693
                         7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0041613640IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408614641IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6618639IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-5619639IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4620639IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.352643667IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028643669IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53668696IPR000571Zinc finger, CCCH-type
SMARTSM003560.1670695IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5672694IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1048 aa     Download sequence    Send to blast
MESSSKNLFK ELFGPPPPRR PIPSKTLSTV VKIFSIFSDQ NPFSQHSSYT KQSDDSCNDV  60
VTPRGEKEAS NELVGSATVE AQKLSRGGKE ISNELVGSAT VEAQILPVHD KTNNDEIDGD  120
LSKEISFSGS KLIIDELGRT NTENKAMDRF PSDEEGANDA MGEFGRVHEE LSGIERILMD  180
ESDDFDVLQL PDKDSNFDFL NGFSSILDTD VCVTNFITNE SKGSGKMTVD GDMKEDRTGE  240
KKRKDVEVNK LSSGGDEAKS DNHLSLVFSD TNFITHESKG SGKMTVNGDM KADRTGEKKR  300
KDVEVNKLFS GGDEAKSDNH LSVLTVTPDC QNQYVRKKRK LCEKTSPQDL SDSGGLTFSA  360
LKSGYEEGAV SNSIRKESKS VNATKGVTEK TKDTSAKDVN SGLGKLSFID SGTSSSTKLR  420
GPDPVVRGKM VKQNVNGNTG KVSAMKVGTN RPKGRERFQY SREELLKLWK ITSAPEDILE  480
TVREINVELQ HGKIQNSAAG KISCGSNEGK LVAVTKDKMA KDKDSSILKD KKRGSSSETK  540
KEKKKVSCRH LYDLQFKYHS SHLHKKRCQS MNYEHMTGFF RFSSRKTRQK RKKRAEMNKK  600
LGVKRLKLKP LVKPKVISDC RHYLKGRCQE GENCKFSHDV IPLTKSKPCC HFARQACMKG  660
DDCPYDHQLS SYPCNSYVAA GFCSRGDSCL FSHKIPSGTA ADVSKCEPTL EQHKSDSKQQ  720
CNANASLPSE IAALKSLKED LTKQTNQQAK APKGLSFLSS GKSSLKDAGK HEEAYLSQKS  780
GGAAGTSSQP NIATRTAVNL VKTLMDTPAS DTSQGLEFPS SDSNSVGSLE NKKQANLSVH  840
GDHSSFHSFG KTLLQESAKY EKVGLSNRAG VAGGGGSDGG GKQLNKEMSS RVTDCEKRQS  900
HPAPMSCKQS VPSSGGPLYD NYGGESQATL PTNGHSDTQI KEKETANGSD NAVQQKLWGS  960
PTSIGQFSTK VGMKNTSSTS QRALLSTLAF AAKYESGIKM TSAATFKEVA KNGGSSSSGH  1020
KQNEPSKASA ILDFLYSGGN KEKKGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696517.10.0PREDICTED: uncharacterized protein LOC104909038 isoform X1
TrEMBLA0A0K9REP90.0A0A0K9REP9_SPIOL; Uncharacterized protein
STRINGXP_010696517.10.0(Beta vulgaris)