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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bv8_201220_hxfs.t1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 31058.4 Da PI: 10.3614 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bv8_201220_hxfs.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 329.4 | 1e-100 | 1 | 280 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaavaerd.........maflqrdkalaernkalverdn 79
md dg + rn+gyy+p +k +l+lqlmssia+r + re+ l +++++a +++rd +++ +rd++++ +n
Bv8_201220_hxfs.t1 1 MDGDGGLNmRNWGYYDPP--MK-HLNLQLMSSIADRKPLLggRESAL-IANTNAGFHQRDygvpsshyhVDY-MRDTWINR--------EN 78
899999999*********..77.***********9998887677777.8888999*****888887777777.77888776........9* PP
GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
k++++l+ +s ++v +t +++ + q+ +++ +ee i++++ ++ ++ kkr+ +k++k++k+kk+kk+
Bv8_201220_hxfs.t1 79 KFFNMLPSGHS--------YGVPTETAPTHHPPM----QMLRQPESSNEE-----RMIRTEP-VEINNGPLKKRSAGKSEKAPKTKKPKKT 151
*******8887........788889999999888....555555443444.....4455533.4445666777899999***********8 PP
GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmS 261
++ +k+ + + +r+k+ kk++++v+ng+++D+st+P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s+krrgaRiagrKmS
Bv8_201220_hxfs.t1 152 PSGPKDGGSGSA--QRAKSAKKTTEVVINGIDMDISTIPIPVCSCTGTPQQCYRWGSGGWQSACCTTSMSMYPLPMSAKRRGARIAGRKMS 240
888855554444..79*************************************************************************** PP
GAGA_bind 262 qgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
gafkk+LekLaaeGy++sn +DL++hWAkHGtnkfvtir
Bv8_201220_hxfs.t1 241 LGAFKKVLEKLAAEGYNFSNSIDLRTHWAKHGTNKFVTIR 280
***************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDGDGGLNMR NWGYYDPPMK HLNLQLMSSI ADRKPLLGGR ESALIANTNA GFHQRDYGVP 60
SSHYHVDYMR DTWINRENKF FNMLPSGHSY GVPTETAPTH HPPMQMLRQP ESSNEERMIR 120
TEPVEINNGP LKKRSAGKSE KAPKTKKPKK TPSGPKDGGS GSAQRAKSAK KTTEVVINGI 180
DMDISTIPIP VCSCTGTPQQ CYRWGSGGWQ SACCTTSMSM YPLPMSAKRR GARIAGRKMS 240
LGAFKKVLEK LAAEGYNFSN SIDLRTHWAK HGTNKFVTIR
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 132 | 146 | KRSAGKSEKAPKTKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
